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Sample GSM82342 Query DataSets for GSM82342
Status Public on Apr 30, 2007
Title 1246_p_1
Sample type RNA
 
Source name biopsy
Organism Homo sapiens
Characteristics female, cervical cancer
Extracted molecule total RNA
Extraction protocol ISOGEN(Wako pure chemical)+RNeasy(QIAGEN)
Label Cy5
Label protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3ACodeLink+Gene+E%28270813678-B500%29?OpenDocument&hometitle=WebDocs
 
Hybridization protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3ACodeLink+Gene+E%28270810969-B500%29?OpenDocument&hometitle=WebDocs
Scan protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3AScanning+CodeLi%28248345081-B500%29?OpenDocument&hometitle=WebDocs
Description prior to treatment, chemoradiotherapy
Data processing global median normalization
 
Submission date Nov 08, 2005
Last update date Oct 23, 2008
Contact name Shuhei Noda
E-mail(s) [email protected]
Organization name National institute of radiological sciences
Department Frontier research center
Street address Anagawa 4-9-1
City Chiba
State/province Chiba
ZIP/Postal code 2658333
Country Japan
 
Platform ID GPL2895
Series (2)
GSE3578 Activated Cell Death Pathway
GSE20167 Gene expression profiles of cervical cancers for novel molecular classification

Data table header descriptions
ID_REF
Array Logical array
Raw_intensity Raw signal intensity value
VALUE same as UNF_VALUE but with flagged values removed
Quality_flag CodeLink software excludes 'M' flagged spots in the analysis. The spot is identified to be defective through image inspection at manufacturing, and is flagged to indicate exclusion from further analysis. No expression value is provided for this flag.
Signal_strength Signal strength
Spot_mean Spot median
Spot_median Spot median
Spot_stdev Spot standard deviation
Spot_area Spot area
Spot_diameter Spot diameter
Spot_noise_level Spot noise level
Bkgd_mean Background mean
Bkgd_median Background median
Bkgd_stdev Background standard deviation
Bkgd_area Background area
UNF_VALUE Median normalized signal intensity value

Data table
ID_REF Array Raw_intensity VALUE Quality_flag Signal_strength Spot_mean Spot_median Spot_stdev Spot_area Spot_diameter Spot_noise_level Bkgd_mean Bkgd_median Bkgd_stdev Bkgd_area UNF_VALUE
1001 1 11699.6084 171.4153 G 123.8305 11778.6084 3502 13490.2998 216 16.58371925 95.11881212 79.3451 79 10.7459 234 171.4153
1002 1 822.4623 12.0502 G 9.8247 899.4623 1039 450.2576 108 11.72646046 91.5512047 76.2267 77 9.7008 178 12.0502
1003 1 3.3333 0.0488 L 0.8663 82.3333 83 11.9873 57 8.519076347 95.03577384 79.2458 79 10.6905 122 0.0488
1004 1 18.6383 0.2731 G 1.042 97.6383 99 13.6825 47 7.735777855 93.70041791 79.1429 79 9.8003 188 0.2731
1005 1 12.0556 0.1766 L 0.9438 86.0556 86 13.2307 36 6.770275116 91.17583768 75.8268 74 11.4506 185 0.1766
1006 1 22.8305 0.3345 G 1.0987 97.8305 98 12.2863 59 8.667244911 89.04102675 74.6409 75 9.3607 187 0.3345
1007 1 19.1132 0.28 G 1.0169 97.1132 97 13.3242 53 8.214724541 95.49692172 78.5 78 11.6646 188 0.28
1008 1 11958.7803 175.2125 G 127.8555 12036.7803 4589 13329.8701 213 16.46815109 94.14362575 77.9386 78 10.7624 236 175.2125
1009 1 446.6633 6.5442 G 5.6095 524.6633 594 213.1958 100 11.28379154 93.53178202 77.9302 78 10.3545 178 6.5442
1010 1 667.8248 9.7845 G 8.1001 743.8248 812 365.841 97 11.11324596 91.82938145 75.1923 76 10.5529 188 9.7845
1011 1 98.675 1.4457 G 1.9158 173.675 175 36.8133 80 10.09253025 90.65368789 74.7637 75 10.4358 188 1.4457
1012 1 95.3333 1.3968 G 1.9184 168.3333 175 37.0435 78 9.965575218 87.74494553 74.6319 73 9.83 188 1.3968
1013 1 38.2714 0.5607 G 1.2537 112.2714 110 17.2295 70 9.44069767 89.54941272 75.1868 74 10.3663 188 0.5607
1014 1 12.1081 0.1774 L 0.9602 87.1081 87 10.7119 37 6.86366272 90.71932603 74.522 75 10.4795 188 0.1774
1015 1 13384.2295 196.0973 G 141.2573 13462.2295 6891 13997.5615 239 17.44431877 95.30290857 80.0135 78 11.5353 231 196.0973
1016 1 31.1972 0.4571 G 1.1607 110.1972 109 15.5831 71 9.507891655 94.94231008 79.3111 79 10.6282 186 0.4571
1017 1 11.2623 0.165 L 0.9541 88.2623 86 11.1912 61 8.812923431 92.5062674 77.9554 77 10.3375 116 0.165
1018 1 8.3226 0.1219 L 0.9164 85.3226 85 11.0815 31 6.282549381 93.10857981 77.3876 77 10.7391 184 0.1219
1019 1 17.4359 0.2555 L 0.9653 95.4359 96 13.0792 39 7.04672575 98.86392814 78.9341 78 13.9093 188 0.2555
1020 1 29.5862 0.4335 L 0.7694 111.5862 113 24.8478 29 6.076507568 145.0361928 93.8421 82 42.0241 158 0.4335

Total number of rows: 54359

Table truncated, full table size 5826 Kbytes.




Supplementary file Size Download File type/resource
GSM82342.TXT.gz 2.3 Mb (ftp)(http) TXT
Processed data included within Sample table
Processed data provided as supplementary file
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