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Sample GSM82348 Query DataSets for GSM82348
Status Public on Apr 30, 2007
Title 275_d_1
Sample type RNA
 
Source name biopsy
Organism Homo sapiens
Characteristics female, cervical cancer
Extracted molecule total RNA
Extraction protocol ISOGEN(Wako pure chemical)+RNeasy(QIAGEN)
Label Cy5
Label protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3ACodeLink+Gene+E%28270813678-B500%29?OpenDocument&hometitle=WebDocs
 
Hybridization protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3ACodeLink+Gene+E%28270810969-B500%29?OpenDocument&hometitle=WebDocs
Scan protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3AScanning+CodeLi%28248345081-B500%29?OpenDocument&hometitle=WebDocs
Description during treatment, radiotherapy alone
Data processing global median normalization
 
Submission date Nov 08, 2005
Last update date Oct 23, 2008
Contact name Shuhei Noda
E-mail(s) [email protected]
Organization name National institute of radiological sciences
Department Frontier research center
Street address Anagawa 4-9-1
City Chiba
State/province Chiba
ZIP/Postal code 2658333
Country Japan
 
Platform ID GPL2895
Series (1)
GSE3578 Activated Cell Death Pathway

Data table header descriptions
ID_REF
Array Logical array
Raw_intensity Raw signal intensity value
VALUE same as UNF_VALUE but with flagged values removed
Quality_flag CodeLink software excludes 'M' flagged spots in the analysis. The spot is identified to be defective through image inspection at manufacturing, and is flagged to indicate exclusion from further analysis. No expression value is provided for this flag.
Signal_strength Signal strength
Spot_mean Spot median
Spot_median Spot median
Spot_stdev Spot standard deviation
Spot_area Spot area
Spot_diameter Spot diameter
Spot_noise_level Spot noise level
Bkgd_mean Background mean
Bkgd_median Background median
Bkgd_stdev Background standard deviation
Bkgd_area Background area
UNF_VALUE Median normalized signal intensity value

Data table
ID_REF Array Raw_intensity VALUE Quality_flag Signal_strength Spot_mean Spot_median Spot_stdev Spot_area Spot_diameter Spot_noise_level Bkgd_mean Bkgd_median Bkgd_stdev Bkgd_area UNF_VALUE
1001 1 13133.5479 177.881 G 115.7933 13224.5479 6688 13884.5771 190 15.55363369 114.2082257 92.1467 91 15.4721 233 177.881
1002 1 798.81 10.8191 G 8.129 884.81 949 397.3626 102 11.39607143 108.8457781 86.8232 86 15.2305 187 10.8191
1003 1 -3.1379 -0.0425 L 0.7849 90.8621 86 12.0594 29 6.076507568 115.7619964 92.8297 94 14.508 188 -0.0425
1004 1 11.6111 0.1573 L 0.9457 97.6111 99 18.3474 36 6.770275116 103.2196461 85.7418 86 11.4798 188 0.1573
1005 1 8.7143 0.118 L 0.9084 89.7143 86 15.4302 35 6.675580978 98.76354736 82.4083 81 11.8424 175 0.118
1006 1 17.1842 0.2327 L 0.9981 97.1842 98 13.1246 38 6.955796242 97.37008713 79.6429 80 11.5801 188 0.2327
1007 1 36.0597 0.4884 G 1.208 114.0597 116 13.9817 67 9.236181259 94.41827321 79.6978 78 10.9455 188 0.4884
1008 1 14400.7773 195.0444 G 144.0311 14480.7773 7411 15190.4766 182 15.22266674 100.5392739 81.6009 80 13.6929 236 195.0444
1009 1 260.6818 3.5307 G 3.6501 338.6818 369 98.9654 88 10.58513451 92.7873261 78.1824 78 9.8582 176 3.5307
1010 1 567.4149 7.6851 G 7.0034 644.4149 714 296.0056 94 10.94004154 92.01408185 78.064 77 10.0094 178 7.6851
1011 1 109.6667 1.4853 G 2.0537 185.6667 196 41.5994 84 10.34176636 90.40653603 76.0604 76 9.6044 188 1.4853
1012 1 64.5789 0.8747 G 1.5609 139.5789 139 25.0128 76 9.836981773 89.42280738 75.5944 75 9.6152 186 0.8747
1013 1 28.1639 0.3815 G 1.1398 104.1639 102 14.1771 61 8.812923431 91.38838556 75.8056 76 10.2589 186 0.3815
1014 1 28.2 0.3819 G 1.1261 109.2 109 15.1098 55 8.368284225 96.96854648 80.6703 81 10.6457 188 0.3819
1015 1 14440.0684 195.5766 G 142.7556 14524.0684 5223 15951.3711 225 16.92568779 101.7407959 83.8584 84 11.8272 234 195.5766
1016 1 51.1313 0.6925 G 1.3687 132.1313 131 20.6146 99 11.22723103 96.53474291 80.6973 81 10.3565 113 0.6925
1017 1 16 0.2167 G 1.0028 93 94 12.8986 64 9.027033806 92.74198194 77.3027 77 10.4947 113 0.2167
1018 1 3.369 0.0456 L 0.8779 82.369 81 10.7191 84 10.34176636 93.82102206 78.8077 79 9.8807 188 0.0456
1019 1 3.3667 0.0456 L 0.8697 82.3667 81 12.0069 30 6.18038702 94.71114207 78.7083 79 10.4741 148 0.0456
1020 1 26.7458 0.3622 G 1.0838 110.7458 111 17.3162 59 8.667244911 102.1824765 85.3056 84 12.1217 186 0.3622

Total number of rows: 54359

Table truncated, full table size 5840 Kbytes.




Supplementary file Size Download File type/resource
GSM82348.TXT.gz 2.3 Mb (ftp)(http) TXT
Processed data included within Sample table
Processed data provided as supplementary file
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