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Sample GSM82366 Query DataSets for GSM82366
Status Public on Apr 30, 2007
Title 275_d_2
Sample type RNA
 
Source name biopsy
Organism Homo sapiens
Characteristics female, cervical cancer
Extracted molecule total RNA
Extraction protocol ISOGEN(Wako pure chemical)+RNeasy(QIAGEN)
Label Cy5
Label protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3ACodeLink+Gene+E%28270813678-B500%29?OpenDocument&hometitle=WebDocs
 
Hybridization protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3ACodeLink+Gene+E%28270810969-B500%29?OpenDocument&hometitle=WebDocs
Scan protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3AScanning+CodeLi%28248345081-B500%29?OpenDocument&hometitle=WebDocs
Description during treatment, radiotherapy alone
Data processing global median normalization
 
Submission date Nov 08, 2005
Last update date Oct 23, 2008
Contact name Shuhei Noda
E-mail(s) [email protected]
Organization name National institute of radiological sciences
Department Frontier research center
Street address Anagawa 4-9-1
City Chiba
State/province Chiba
ZIP/Postal code 2658333
Country Japan
 
Platform ID GPL2895
Series (1)
GSE3578 Activated Cell Death Pathway

Data table header descriptions
ID_REF
Array Logical array
Raw_intensity Raw signal intensity value
VALUE same as UNF_VALUE but with flagged values removed
Quality_flag CodeLink software excludes 'M' flagged spots in the analysis. The spot is identified to be defective through image inspection at manufacturing, and is flagged to indicate exclusion from further analysis. No expression value is provided for this flag.
Signal_strength Signal strength
Spot_mean Spot median
Spot_median Spot median
Spot_stdev Spot standard deviation
Spot_area Spot area
Spot_diameter Spot diameter
Spot_noise_level Spot noise level
Bkgd_mean Background mean
Bkgd_median Background median
Bkgd_stdev Background standard deviation
Bkgd_area Background area
UNF_VALUE Median normalized signal intensity value

Data table
ID_REF Array Raw_intensity VALUE Quality_flag Signal_strength Spot_mean Spot_median Spot_stdev Spot_area Spot_diameter Spot_noise_level Bkgd_mean Bkgd_median Bkgd_stdev Bkgd_area UNF_VALUE
1001 1 13588.6582 156.5754 G 139.0727 13670.6582 6331 15207.625 154 14.00281715 98.29865174 82.5417 82 10.8658 124 156.5754
1002 1 725.236 8.3565 G 8.1714 808.236 887 455.9836 89 10.64510822 98.91088289 81.9945 83 10.6073 187 8.3565
1003 1 6.5806 0.0758 L 0.9075 89.5806 90 11.1522 31 6.282549381 98.70742289 83.5314 83 10.4716 181 0.0758
1004 1 13.4286 0.1547 L 0.9701 99.4286 96 11.8618 35 6.675580978 102.4917465 84.5304 86 10.9945 187 0.1547
1005 1 15.8889 0.1831 L 0.997 102.8889 101 17.704 36 6.770275116 103.1944113 85.7557 87 10.7963 182 0.1831
1006 1 27.561 0.3176 G 1.0926 109.561 108 12.9766 41 7.225152016 100.2750732 82.3132 82 12.1834 188 0.3176
1007 1 44.5821 0.5137 G 1.2907 125.5821 126 17.4006 67 9.236181259 97.29696412 81.7582 81 10.8646 188 0.5137
1008 1 13825.373 159.303 G 135.1576 13911.373 4701 15544.5967 171 14.75547218 102.9270322 86.35 86 11.2847 124 159.303
1009 1 350.3441 4.0368 G 4.4596 431.3441 484 170.677 93 10.88169479 96.72259584 81.5632 81 10.4817 180 4.0368
1010 1 500.9418 5.7721 G 6.019 581.9418 702 278.7218 86 10.46415806 96.68410765 81.0112 81 10.4561 185 5.7721
1011 1 117.7848 1.3572 G 2.0348 199.7848 213 51.2721 79 10.02925301 98.18260649 82.0769 82 10.7884 188 1.3572
1012 1 56.3108 0.6488 G 1.4145 137.3108 134 24.3488 74 9.706685066 97.07617888 80.9341 81 10.7175 188 0.6488
1013 1 36.5606 0.4213 G 1.2258 116.5606 115 14.2915 66 9.166996002 95.09073696 81.2363 80 10.0605 188 0.4213
1014 1 35.4697 0.4087 G 1.2141 115.4697 115 15.0688 66 9.166996002 95.10893603 79.467 80 10.0726 188 0.4087
1015 1 13187.1592 151.9491 G 134.4263 13271.1592 5350 14954.8057 140 13.35116196 98.7243914 84.2637 84 9.8163 188 151.9491
1016 1 72.4058 0.8343 G 1.5947 154.4058 163 30.1346 69 9.373021126 96.82370068 82.2802 82 9.8825 188 0.8343
1017 1 24.1225 0.278 G 1.0953 107.1225 106 15.0464 49 7.898653984 97.80306001 84.0529 83 9.8687 176 0.278
1018 1 32.4419 0.3738 G 1.1671 113.4419 100 51.0095 43 7.39927721 97.20137313 81.7912 81 10.8009 188 0.3738
1019 1 6.3143 0.0728 L 0.8844 90.3143 92 12.6667 35 6.675580978 102.1243584 84.2056 84 12.0829 186 0.0728
1020 1 36.0678 0.4156 G 1.1882 121.0678 115 22.7662 59 8.667244911 101.8890663 85.6444 85 11.2594 186 0.4156

Total number of rows: 54359

Table truncated, full table size 5842 Kbytes.




Supplementary file Size Download File type/resource
GSM82366.TXT.gz 2.3 Mb (ftp)(http) TXT
Processed data included within Sample table
Processed data provided as supplementary file
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