NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM82373 Query DataSets for GSM82373
Status Public on Apr 30, 2007
Title 1990_d_1
Sample type RNA
 
Source name biopsy
Organism Homo sapiens
Characteristics female, cervical cancer
Extracted molecule total RNA
Extraction protocol ISOGEN(Wako pure chemical)+RNeasy(QIAGEN)
Label Cy5
Label protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3ACodeLink+Gene+E%28270813678-B500%29?OpenDocument&hometitle=WebDocs
 
Hybridization protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3ACodeLink+Gene+E%28270810969-B500%29?OpenDocument&hometitle=WebDocs
Scan protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3AScanning+CodeLi%28248345081-B500%29?OpenDocument&hometitle=WebDocs
Description during treatment, radiotherapy alone
Data processing global median normalization
 
Submission date Nov 08, 2005
Last update date Oct 23, 2008
Contact name Shuhei Noda
E-mail(s) [email protected]
Organization name National institute of radiological sciences
Department Frontier research center
Street address Anagawa 4-9-1
City Chiba
State/province Chiba
ZIP/Postal code 2658333
Country Japan
 
Platform ID GPL2895
Series (1)
GSE3578 Activated Cell Death Pathway

Data table header descriptions
ID_REF
Array Logical array
Raw_intensity Raw signal intensity value
VALUE same as UNF_VALUE but with flagged values removed
Quality_flag CodeLink software excludes 'M' flagged spots in the analysis. The spot is identified to be defective through image inspection at manufacturing, and is flagged to indicate exclusion from further analysis. No expression value is provided for this flag.
Signal_strength Signal strength
Spot_mean Spot median
Spot_median Spot median
Spot_stdev Spot standard deviation
Spot_area Spot area
Spot_diameter Spot diameter
Spot_noise_level Spot noise level
Bkgd_mean Background mean
Bkgd_median Background median
Bkgd_stdev Background standard deviation
Bkgd_area Background area
UNF_VALUE Median normalized signal intensity value

Data table
ID_REF Array Raw_intensity VALUE Quality_flag Signal_strength Spot_mean Spot_median Spot_stdev Spot_area Spot_diameter Spot_noise_level Bkgd_mean Bkgd_median Bkgd_stdev Bkgd_area UNF_VALUE
1001 1 17612.1035 171.7828 G 173.1453 17694.1035 9687 17157.9863 127 12.71618748 102.1922378 82.9505 82 13.4615 188 171.7828
1002 1 871.8171 8.5034 G 10.1174 951.8171 1085 455.428 82 10.21790791 94.0776473 79.1154 80 9.3851 188 8.5034
1003 1 2.3061 0.0225 L 0.8736 82.3061 80 11.2616 49 7.898653984 94.21450955 80.0991 80 9.4763 115 0.0225
1004 1 6.1746 0.0602 L 0.9315 86.1746 85 12.2092 63 8.956232071 92.50754488 79.8018 80 8.3384 115 0.0602
1005 1 4.0727 0.0397 L 0.9035 82.0727 82 10.7633 55 8.368284225 90.84021796 78.125 78 8.5601 124 0.0397
1006 1 27.4694 0.2679 G 1.1512 106.4694 107 12.1371 49 7.898653984 92.48653512 78.3736 79 8.991 188 0.2679
1007 1 40.1 0.3911 G 1.2688 120.1 118 16.9034 60 8.740387917 94.65456908 79.9066 80 9.7697 188 0.3911
1008 1 16351.4961 159.4872 G 177.2995 16430.4961 5636 17895.1523 161 14.31752682 92.67085434 79.3583 79 9.1139 124 159.4872
1009 1 434.7528 4.2404 G 5.4627 514.7528 538 205.5718 89 10.64510822 94.23019574 79.2473 80 9.4868 188 4.2404
1010 1 377.3544 3.6806 G 4.9221 456.3544 522 214.8669 79 10.02925301 92.71623509 78.142 79 9.1442 168 3.6806
1011 1 85.5921 0.8348 G 1.8096 162.5921 170 31.2819 76 9.836981773 89.84782945 77.2088 77 8.5652 188 0.8348
1012 1 42.375 0.4133 G 1.3319 119.375 117 16.404 56 8.444016457 89.6263402 76.1326 77 8.4176 187 0.4133
1013 1 21.9322 0.2139 G 1.1034 99.9322 100 11.2293 59 8.667244911 90.5697745 77.3022 78 8.3798 188 0.2139
1014 1 16.2308 0.1583 G 1.0431 92.2308 91 9.2361 39 7.04672575 88.4159393 76.7967 76 8.2773 188 0.1583
1015 1 15363.2266 149.848 G 162.1042 15444.2266 6515 16500.5723 130 12.86550236 95.2734228 81.2331 81 9.5156 169 149.848
1016 1 139.0294 1.356 G 2.3612 218.0294 240 56.3943 68 9.304853439 92.33800933 79.0604 79 8.892 188 1.356
1017 1 33.1034 0.3229 G 1.2111 113.1034 113 13.6757 58 8.59348011 93.39168202 80.5111 80 8.9278 186 0.3229
1018 1 11.8947 0.116 L 0.9961 90.8947 90 14.5598 38 6.955796242 91.25165678 79.4695 79 8.1678 170 0.116
1019 1 13.8571 0.1352 L 0.9905 95.8571 97 13.1268 42 7.312732697 96.77934366 81.6611 82 9.8529 186 0.1352
1020 1 38.918 0.3796 G 1.2633 120.918 120 16.0902 61 8.812923431 95.71487189 83.1044 82 9.1432 188 0.3796

Total number of rows: 54359

Table truncated, full table size 5818 Kbytes.




Supplementary file Size Download File type/resource
GSM82373.TXT.gz 2.3 Mb (ftp)(http) TXT
Processed data included within Sample table
Processed data provided as supplementary file
| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap