|
| Status |
Public on Nov 27, 2024 |
| Title |
15365 |
| Sample type |
genomic |
| |
|
| Source name |
Genomic DNA methylation profile of articular cartilage from human foetal femur
|
| Organism |
Homo sapiens |
| Characteristics |
Sex: female
stage_weeks: 11
maternal_bmi: 18
maternal_age: 35.4
|
| Extracted molecule |
genomic DNA |
| Extraction protocol |
Genomic DNA was extracted using Qiagen Allprep kit.
|
| Label |
Cy5 and Cy3
|
| Label protocol |
Illumina
|
| |
|
| Hybridization protocol |
Genomic DNA was bisulfite converted using the standard protocol for the Illumina methylation EPIC 850k (v1.0) array.
|
| Scan protocol |
Scanning was performed as standard with the iScan N0660 (#4498).
|
| Description |
Articular cartilage from human foetal femur
|
| Data processing |
R v4.2.2 & minfi
Quantile-normalised Average Beta
Unmethylated and methylated signal intensities
|
| |
|
| Submission date |
May 02, 2024 |
| Last update date |
Nov 27, 2024 |
| Contact name |
Sarah Rice |
| E-mail(s) |
[email protected]
|
| Organization name |
Newcastle University
|
| Department |
Biosciences Institute
|
| Street address |
Central Parkway
|
| City |
Newcastle upon Tyne |
| ZIP/Postal code |
NE1 3BZ |
| Country |
United Kingdom |
| |
|
| Platform ID |
GPL21145 |
| Series (1) |
| GSE266461 |
DNA methylation epigenome analysis of articular cartilage from human foetal femur samples using Illumina methylation EPIC 850k (v1.0) arrays. |
|
