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Sample GSM82687 Query DataSets for GSM82687
Status Public on Sep 06, 2006
Title proband k, before moderate exercise
Sample type RNA
 
Source name white blood cells
Organism Homo sapiens
Characteristics male, healthy, no medicamentation
Extracted molecule total RNA
Extraction protocol 9ml blood were collected and erythrocyte lysis using Qiagen Erythrocyte lysis buffer was performed immediately. White blood cells were washed in icecold PBS two times. Cells were then lysed using Trizol (Invitrogen).Phase lock gel tubes (Eppendorf) were used to extract the RNA containing phase. Total RNA was extracted from the tissue lysate using an RNeasy kit (Qiagen).
Label biotin
Label protocol Approximately 3 µg of total RNA was processed to produce biotinylated cRNA targets.
 
Hybridization protocol standard Affymetrix procedures
Scan protocol standard Affymetrix procedures
Description proband k, before moderate exercise, white blood cells, male, healthy, no medicamentation
Data processing GCOS 1.2 and GeneSpring 7.1 (Agilent)
 
Submission date Nov 10, 2005
Last update date Sep 06, 2006
Contact name Sandy Mosig
E-mail(s) [email protected], [email protected]
Phone +49-3641-934813
Fax +49-3641-933950
Organization name University Hospital Jena
Department Molecular Hemostaseology - Institute of Vascular Medicine
Street address Bachstrasse 18
City Jena
ZIP/Postal code 07743
Country Germany
 
Platform ID GPL571
Series (1)
GSE3606 Gene expression profiles in white blood cells in response to exercise

Data table header descriptions
ID_REF Affymetrix annotation numbers
VALUE GCOS 1.2 -calculated Signal intensity
ABS_CALL the call in an absolute analysis that indicates if the transcript was present (P), absent (A), marginal (M), or no call (NC)
DETECTION P-VALUE 'detection p-value', p-value that indicates the significance level of the detection call

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-BioB-5_at 339.7 P 0.000509
AFFX-BioB-M_at 495.1 P 0.00006
AFFX-BioB-3_at 276.7 P 0.00141
AFFX-BioC-5_at 1029.6 P 0.00007
AFFX-BioC-3_at 913.3 P 0.000044
AFFX-BioDn-5_at 858.9 P 0.000044
AFFX-BioDn-3_at 5077.4 P 0.000095
AFFX-CreX-5_at 12986.2 P 0.000052
AFFX-CreX-3_at 14392.1 P 0.000044
AFFX-DapX-5_at 8.7 A 0.5
AFFX-DapX-M_at 4.9 A 0.58862
AFFX-DapX-3_at 3.3 A 0.932322
AFFX-LysX-5_at 6 A 0.5
AFFX-LysX-M_at 6.8 A 0.686277
AFFX-LysX-3_at 7.4 A 0.425962
AFFX-PheX-5_at 17.6 A 0.60308
AFFX-PheX-M_at 2.2 A 0.941556
AFFX-PheX-3_at 12 A 0.672921
AFFX-ThrX-5_at 36.4 A 0.382599
AFFX-ThrX-M_at 1.6 A 0.852061

Total number of rows: 22277

Table truncated, full table size 592 Kbytes.




Supplementary data files not provided

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