|
| Status |
Public on Oct 15, 2024 |
| Title |
Long Covid 5 |
| Sample type |
SRA |
| |
|
| Source name |
whole blood
|
| Organism |
Homo sapiens |
| Characteristics |
tissue: whole blood
cell type: whole blood
treatment: No
sample id: S023_11
|
| Extracted molecule |
total RNA |
| Extraction protocol |
Whole blood cell RNA was extracted using PAXgene Blood RNA Kit, Qiagen.
100 ng RNA was used to make libraries using TruSeq RNA Library Prep Kit v2.
|
| |
|
| Library strategy |
RNA-Seq |
| Library source |
transcriptomic |
| Library selection |
cDNA |
| Instrument model |
Illumina NovaSeq X Plus |
| |
|
| Data processing |
Kallisto pseudoalignment and bias correction was used for fragment alignment to the human cDNA database (GRCh38)
Fastq files were trimmed prior to Kallisto pseudoalignment using Fastqc
Assembly: GRCh38
Supplementary files format and content: Tab-delemited counts files
Supplementary files format and content: Tab-delemited TPM files
|
| |
|
| Submission date |
Jun 17, 2024 |
| Last update date |
Oct 15, 2024 |
| Contact name |
Hussain Syed |
| E-mail(s) |
[email protected]
|
| Organization name |
University of Alberta
|
| Department |
Medicine
|
| Lab |
Mason Lab
|
| Street address |
116 Street and 85th Ave
|
| City |
Edmonton |
| State/province |
Alberta |
| ZIP/Postal code |
T6G2R3 |
| Country |
Canada |
| |
|
| Platform ID |
GPL34284 |
| Series (1) |
| GSE270045 |
Upregulation of olfactory receptors and neuronal-associated genes highlights complex immune and neuronal dysregulation in Long COVID patients |
|
| Relations |
| SRA |
SRX24949193 |
| BioSample |
SAMN41876974 |
