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GEO accession:
Sample GSM833430
Query DataSets for GSM833430
Status
Public on Dec 01, 2012
Title
Total RNA at ZT8 Sample 1
Sample type
RNA
Source name
Liver
Organism
Mus musculus
Characteristics
sample type: Total RNA
time: ZT8
tissue: liver
age: 12 weeks
strain: C57BL/6
gender: male
Extracted molecule
total RNA
Extraction protocol
RNA extract by trisol.
Label
Biotin
Label protocol
Affymetrix
Hybridization protocol
Affymetrix
Scan protocol
Affymetrix
Data processing
MAS5
Submission date
Nov 16, 2011
Last update date
Dec 01, 2012
Contact name
Frédéric Gachon
E-mail(s)
[email protected]
Phone
+41 791926057
Organization name
University Of Queensland
Department
Institute for Molecular Bioscience
Street address
306 Carmody Road
City
St Lucia
State/province
QLD
ZIP/Postal code
4072
Country
Australia
Platform ID
GPL1261
Series (1)
GSE33726
The circadian clock coordinates ribosome biogenesis.
Data table header descriptions
ID_REF
VALUE
Signal intensity
ABS_CALL
Present, Marginal or Absent
DETECTION P-VALUE
P-value for the call
Data table
ID_REF
VALUE
ABS_CALL
DETECTION P-VALUE
AFFX-BioB-5_at
139.899
P
0.00010954
AFFX-BioB-M_at
337.277
P
4.42873e-05
AFFX-BioB-3_at
180.86
P
4.42873e-05
AFFX-BioC-5_at
433.956
P
5.16732e-05
AFFX-BioC-3_at
568.48
P
4.42873e-05
AFFX-BioDn-5_at
998.373
P
4.42873e-05
AFFX-BioDn-3_at
1707.69
P
5.16732e-05
AFFX-CreX-5_at
6204.34
P
5.16732e-05
AFFX-CreX-3_at
6732.16
P
4.42873e-05
AFFX-DapX-5_at
103.905
P
9.4506e-05
AFFX-DapX-M_at
194.375
P
0.000753643
AFFX-DapX-3_at
272.359
P
5.16732e-05
AFFX-LysX-5_at
13.2117
P
0.000581214
AFFX-LysX-M_at
26.4926
P
0.0138105
AFFX-LysX-3_at
35.8568
P
0.000126798
AFFX-PheX-5_at
17.5336
P
0.000581214
AFFX-PheX-M_at
28.0149
P
0.00762003
AFFX-PheX-3_at
41.9458
P
0.00556451
AFFX-ThrX-5_at
23.0607
P
0.00110197
AFFX-ThrX-M_at
32.1585
P
0.0200219
Total number of rows:
45101
Table truncated, full table size
1381 Kbytes
.
Supplementary file
Size
Download
File type/resource
GSM833430_20091013_ZT8_1_2_ARNtotal__Mouse430_2_.CEL.gz
3.5 Mb
(ftp)
(http)
CEL
GSM833430_20091013_ZT8_1_2_ARNtotal__Mouse430_2_.mas5.CHP.gz
396.3 Kb
(ftp)
(http)
CHP
Processed data included within Sample table
Processed data provided as supplementary file
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