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GEO help: Mouse over screen elements for information. |
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| Status |
Public on Nov 25, 2024 |
| Title |
Brain_E_Exposed_S59 |
| Sample type |
SRA |
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| Source name |
Brain tissue
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| Organism |
Bombus impatiens |
| Characteristics |
tissue: Brain tissue
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| Treatment protocol |
Control or exposed to metal
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| Extracted molecule |
polyA RNA |
| Extraction protocol |
Qiagen RNEasy Mini Kit
Quant-Seq mRNA libraries were prepared by the Iowa State University DNA Facility following manufacturer’s protocols, and subjected to Illumina Quant-Seq using a HiSEQ 3000 Sequencer
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| Library strategy |
RNA-Seq |
| Library source |
transcriptomic |
| Library selection |
cDNA |
| Instrument model |
Illumina HiSeq 3000 |
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| Description |
1-E05-F3_S59
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| Data processing |
nf-core RNASeq pipeline v3.14.0 using Nextflow 24.04.2
Raw reads were trimmed with trim galore, mappes with star, then gene counts quantified with Salmon
Assembly: BIMP3.0 JBEUIP000000000, SUB14541561
Supplementary files format and content: tab delimitd file with the raw counts for each sample (brain and fatbody in separate tsv files)
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| Submission date |
Jul 17, 2024 |
| Last update date |
Nov 25, 2024 |
| Contact name |
Christopher Douglas Robert Wyatt |
| E-mail(s) |
[email protected]
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| Organization name |
UCL
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| Street address |
Gower street
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| City |
London |
| ZIP/Postal code |
WC1E 6BT |
| Country |
United Kingdom |
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| Platform ID |
GPL34712 |
| Series (1) |
| GSE272415 |
New genomic resources inform transcriptomic responses to heavy metal toxins in the common Eastern bumble bee Bombus impatiens |
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| Relations |
| BioSample |
SAMN42556901 |
| SRA |
SRX25355995 |
| Supplementary data files not provided |
SRA Run Selector |
| Raw data are available in SRA |
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