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Sample GSM85661 Query DataSets for GSM85661
Status Public on Dec 01, 2005
Title cysteine treated, 12 h, replicate 1
Sample type RNA
 
Source name suspension cell culture, cysteine 12 h
Organism Arabidopsis thaliana
Characteristics Arabidopsis suspension cell culture, cv Lansberg erecta, 4 days post sub-culturing, sample collected 3 h post-treatment with treatment starting 2 h into the light cycle of a 16 h light 8 h dark light cycle
Biomaterial provider Plant Molecular Biology Group: Rachel Clifton, Ryan Lister, Karen Parker
Treatment protocol 250 mL flasks of suspension cells were treated by the addition of 120 ul of 1 M chloramphenicol to obtain a final concentration of 1 mM in the flask, samples were collected 12 h after treatment.
Extracted molecule total RNA
Label biotin
Label protocol Approximately 5 µg of total RNA was processed to produce biotinylated cRNA targets.
 
Hybridization protocol standard Affymetrix procedures
Scan protocol standard Affymetrix procedures
Description Wild type Arabidopsis suspension cell culture, pale green in colour
Data processing Affymetrix Microarray Suite version 5.0
 
Submission date Dec 01, 2005
Last update date Dec 01, 2005
Contact name Rachel Clifton
E-mail(s) [email protected]
Organization name Plant Energy Biology, ARC Centre of Excellence
Department Biochemistry, UWA
Lab Plant Molecular Biology Group
Street address 4th Floor CMS Building M310, University of Western Australia
City Crawley
State/province Western Australia
ZIP/Postal code 6009
Country Australia
 
Platform ID GPL198
Series (1)
GSE3709 Cell culture treatment study

Data table header descriptions
ID_REF
VALUE MAS5-calculated Signal intensity
ABS_CALL the call in an absolute analysis that indicates if the transcript was present (P), absent (A), marginal (M), or no call (NC)
DETECTION P-VALUE 'detection p-value', p-value that indicates the significance level of the detection call

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-BioB-5_at 194.2 P 0.000509
AFFX-BioB-M_at 293 P 0.000052
AFFX-BioB-3_at 162.4 P 0.000258
AFFX-BioC-5_at 437 P 0.000095
AFFX-BioC-3_at 241.4 P 0.00007
AFFX-BioDn-5_at 457.1 P 0.000044
AFFX-BioDn-3_at 1943.8 P 0.000044
AFFX-CreX-5_at 4738.9 P 0.000044
AFFX-CreX-3_at 5893.5 P 0.000044
AFFX-DapX-5_at 9.1 A 0.340661
AFFX-DapX-M_at 26.2 A 0.175328
AFFX-DapX-3_at 2.9 A 0.971543
AFFX-LysX-5_at 5.8 A 0.559354
AFFX-LysX-M_at 3.2 A 0.868639
AFFX-LysX-3_at 15.1 A 0.382599
AFFX-PheX-5_at 1.2 A 0.868639
AFFX-PheX-M_at 2.2 A 0.699394
AFFX-PheX-3_at 10.2 A 0.749204
AFFX-ThrX-5_at 3.8 A 0.659339
AFFX-ThrX-M_at 16.2 A 0.327079

Total number of rows: 22810

Table truncated, full table size 587 Kbytes.




Supplementary data files not provided

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