|
| Status |
Public on Apr 26, 2012 |
| Title |
24h E.coli-infected, anti-LIF-treated lungs, biological rep1 |
| Sample type |
RNA |
| |
|
| Source name |
24h_E.coli-infection + anti-LIF-treated lungs
|
| Organism |
Mus musculus |
| Characteristics |
strain: C57BL/6
tissue: Lung
infection: intratracheal instillation of E. coli (10^6 CFU)
antibody included in the instillate: anti-LIF
|
| Extracted molecule |
total RNA |
| Extraction protocol |
Trizol extraction of total RNA was performed according to the manufacturer's instructions (Life Technologies). RNA was further purified using the the Qiagen RNEasy kit with the optional DNAse treatment.
|
| Label |
Biotin
|
| Label protocol |
Fragmented, biotinlyated sense strand DNA were prepared from 200 ng total RNA using the WT Target labeling kit according to the manufacturer's protocol (Affymetrix)
|
| |
|
| Hybridization protocol |
5 ug of labeled sense strand DNA were hybridized for 17h at 45 degrees C on a Genechip Mouse Gene Array 1.0 ST Array. GeneChips were washed and stainied in the Affymetrix Fluiidix Station 450.
|
| Scan protocol |
Arrays were scanned using the Affymetrix GeneChip Scanner 3000 7GPlus.
|
| Description |
Ecoli_antiLIF1
|
| Data processing |
CEL files were summarized using the Affymetrix Expression Console (version 1.1). The RMA (Robust Multi-Array Analysis) algorithm was used to generate gene-level data.
|
| |
|
| Submission date |
Jan 06, 2012 |
| Last update date |
Apr 26, 2012 |
| Contact name |
Lee Quinton |
| Organization name |
Boston University School of Medicine
|
| Street address |
72 E Concord St
|
| City |
Boston |
| State/province |
MA |
| ZIP/Postal code |
02118 |
| Country |
USA |
| |
|
| Platform ID |
GPL11078 |
| Series (1) |
| GSE34901 |
Expression data from mouse lungs during E. coli pneumonia in the presence or absence of LIF neutralization |
|
