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Sample GSM859 Query DataSets for GSM859
Status Public on Feb 12, 2002
Title alpha factor release sample030
Sample type RNA
 
Channel 1
Source name asynchronous control
Organism Saccharomyces cerevisiae
Extracted molecule total RNA
 
Channel 2
Source name 30
Organism Saccharomyces cerevisiae
Extracted molecule total RNA
 
 
Description ScanAlyze version 2.33 scanning software was used.
Keywords = Cell-cycle
Keywords = Alpha factor block-release
Lot batch = y744n72
 
Submission date Feb 08, 2002
Last update date Nov 21, 2005
Organization Stanford Microarray Database (SMD)
E-mail(s) [email protected]
Phone 650-498-6012
URL http://genome-www5.stanford.edu/
Department Stanford University, School of Medicine
Street address 300 Pasteur Drive
City Stanford
State/province CA
ZIP/Postal code 94305
Country USA
 
Platform ID GPL59
Series (1)
GSE22 Alpha-factor block-release

Data table header descriptions
ID_REF reference identifier
CH1B_MEAN mean of channel 1 background pixels
CH1B_MEDIAN median of channel 1 background pixels
CH1D_MEAN difference between CH1I_MEAN and CH1B_MEAN
CH2I_MEAN mean of channel 2 signal pixels
CH2D_MEAN difference of CH2I_MEAN and CH2B_MEAN
CH2B_MEAN mean of channel 2 background pixels
CH2B_MEDIAN median of channel 2 background pixels
CH2BN_MEDIAN normalized CH2B_MEDIAN
CH2DN_MEAN normalized CH2D_MEAN
CH2IN_MEAN normalized CH2I_MEAN
CORR simple correlation coefficient of channel 1 and channel 2 pixels
FLAG user defined flag (default=0)
VALUE same as UNF_VALUE but with flagged values removed
PIX_RAT2_MEDIAN
PERGTBCH1I_1SD standard deviation of fraction of pixels greater than CH1B_MEAN
PERGTBCH2I_1SD standard deviation of fraction of pixels greater than CH2B_MEAN
RAT1_MEAN ratio of CH1D_MEAN to CH2D_MEAN
RAT1N_MEAN ratio of CH1DN_MEAN to CH2DN_MEAN
RAT2_MEAN arithmetic mean of ratios of CH2D_MEAN to CH1D_MEAN
RAT2N_MEAN arithmetic mean of ratios of CH2DN_MEAN to CH1DN_MEAN
REGR slope of the simple regression line of channel 2 to channel 1 pixels
TOT_BPIX total number of background pixels
TOT_SPIX total number of signal (spot) pixels
TOP vertical, short-axis spot ellipse minimum pixel coordinate
BOT vertical, short-axis spot ellipse maximum pixel coordinate
LEFT horizontal, long-axis spot ellipse minimum pixel coordinate
RIGHT horizontal, long-axis spot ellipse maximum pixel coordinate
UNF_VALUE aka LOG_RAT2N_MEAN, or log2 of ratio of CH2DN_MEAN and CH1DN_MEAN

Data table
ID_REF CH1B_MEAN CH1B_MEDIAN CH1D_MEAN CH2I_MEAN CH2D_MEAN CH2B_MEAN CH2B_MEDIAN CH2BN_MEDIAN CH2DN_MEAN CH2IN_MEAN CORR FLAG VALUE PIX_RAT2_MEDIAN PERGTBCH1I_1SD PERGTBCH2I_1SD RAT1_MEAN RAT1N_MEAN RAT2_MEAN RAT2N_MEAN REGR TOT_BPIX TOT_SPIX TOP BOT LEFT RIGHT UNF_VALUE
1 299 304 343 654 350 304 304 422 486 908 .902 0 .503 .862 31 31 .98 .706 1.02 1.417 .934 1130 80 58 68 53 63 .503
2 298 296 145 436 132 304 304 422 184 606 .881 0 .344 1 15 15 1.098 .788 .91 1.269 .771 920 80 58 68 63 73 .344
3 297 296 301 602 298 305 304 422 414 836 .914 0 .46 1.344 27 26 1.01 .727 .99 1.375 .851 815 80 58 68 73 83 .46
4 298 296 73 352 48 304 304 422 67 489 .835 0 -.124 .857 15 12 1.521 1.09 .658 .918 .553 809 80 58 68 83 93 -.124
5 298 296 174 544 240 304 304 422 334 756 .899 0 .941 1.4 25 25 .725 .521 1.379 1.92 1.336 799 80 58 68 93 103 .941
6 300 304 71 370 66 304 304 422 92 514 .866 0 .374 1 12 10 1.076 .772 .93 1.296 .657 830 80 57 67 103 113 .374
7 306 304 106 377 73 319 304 422 102 524 .809 0 -.055 .654 23 21 1.452 1.039 .689 .962 .499 820 80 57 67 113 123 -.055
8 308 304 338 557 253 321 304 422 352 774 .924 0 .059 .73 38 37 1.336 .96 .749 1.041 .649 815 80 57 67 123 133 .059
9 311 304 90 362 58 323 304 422 81 503 .783 0 -.152 .625 15 16 1.552 1.111 .644 .9 .459 815 80 57 67 133 143 -.152
10 309 296 96 360 56 322 304 422 78 500 .663 0 -.3 .585 16 15 1.714 1.231 .583 .813 .373 815 80 57 67 143 153 -.3
11 302 296 71 344 32 309 312 433 45 478 .821 0 -.658 .714 16 7 2.219 1.578 .451 .634 .595 815 80 57 67 153 163 -.658
12 300 296 68 344 40 308 304 422 56 478 .828 0 -.28 .694 17 13 1.7 1.214 .588 .824 .578 815 80 57 67 163 173 -.28
13 295 296 9 305 1 304 304 422 2 424 .213 0 -2.17 .75 1 0 9 4.5 .111 .222 .18 815 80 57 67 173 183 -2.17
14 301 296 43 363 59 308 304 422 82 504 .863 0 .931 .909 8 10 .729 .524 1.372 1.907 1.342 815 80 57 67 183 193 .931
15 303 296 73 377 73 309 304 422 102 524 .861 0 .483 1 8 13 1 .716 1 1.397 .803 815 80 57 67 193 203 .483
16 303 296 29 334 30 306 304 422 42 464 .704 0 .534 1.167 7 5 .967 .69 1.034 1.448 .738 815 80 57 67 203 213 .534
17 307 304 33 332 28 306 304 422 39 461 .653 0 .241 .889 13 6 1.179 .846 .848 1.182 .44 815 80 57 67 213 223 .241
18 306 304 28 321 17 304 304 422 24 446 .368 0 -.222 .882 6 5 1.647 1.167 .607 .857 .266 815 80 57 67 223 233 -.222
19 306 304 20501 345 41 303 304 422 57 479 0 0 -8.491 .003 72 10 500.024 359.667 .002 .003 0 815 80 57 67 233 243 -8.491
20 312 304 334 1167 855 306 312 433 1188 1621 .695 0 1.831 1.725 42 50 .391 .281 2.56 3.557 2.149 815 80 57 67 243 253 1.831

Total number of rows: 7680

Table truncated, full table size 899 Kbytes.




Supplementary data files not provided
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