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Sample GSM859443 Query DataSets for GSM859443
Status Public on Dec 31, 2012
Title HSC_day7, biological rep 2
Sample type RNA
 
Source name MF_HSC
Organism Mus musculus
Characteristics cell type: primary hepatic stellate cells
strain: C57BL/6
Treatment protocol Primary hepatic stellate cells were isolated from rodent liver and cultureed in DMEM with 10% fetal bovine serum and antibiotics for 7 days.
Growth protocol Primary hepatic stellate cells were isolated C57BL6 mice, assessed for purity and viability and cultured for 7days.
Extracted molecule total RNA
Extraction protocol Agilent 2100 Bioanalyzer G2939A, Agilent Technologies (Santa Clara, CA)
Nanodrop 8 spectrophotometer, Thermo Scientific/NanoDrop (Wilmington, DE)
Combination of Trizol and Rneasy columns extraction of total RNA was performed according to the manufacturer's instructions.
Label biotin
Label protocol MessageAmp Premier RNA Amplification Kit (Part Number 4385821, AM1792, 4383452), Applied Biosystems/Ambion (Austin, TX)
 
Hybridization protocol Affymetrix GeneChip hybridization Oven 645, Affymetrix (Santa Clara, CA)
Scan protocol Affymetrix GeneChip Scanner 7G, Affymetrix (Santa Clara, CA)
Fluidic station: Affymetrix GeneChip Fluidics Station 450, Affymetrx (Santa Clara, CA)
Sample register: Affymetrix GeneChip Command Console Scan Control 3.0.0.1214, Affymetrix (Santa Clara, CA)
Description Gene expression data from myofibroblastic HSC
Data processing Affymetrix Expression Console version 1.1, Affymetrix (Santa Clara, CA), RMA
 
Submission date Jan 09, 2012
Last update date Dec 31, 2012
Contact name Cynthia Moylan
E-mail(s) [email protected]
Organization name Duke University Medical Center
Department Gastroenterology
Street address 595 LaSalle Street, GSRB1, DUMC 3256
City Durham
State/province NC
ZIP/Postal code 27710
Country USA
 
Platform ID GPL1261
Series (1)
GSE34949 Hedgehog and metabolism

Data table header descriptions
ID_REF
VALUE log2-RMA

Data table
ID_REF VALUE
1415670_at 10.74008519
1415671_at 12.38721824
1415672_at 12.28828375
1415673_at 9.967269551
1415674_a_at 10.98318422
1415675_at 9.847771194
1415676_a_at 11.79362827
1415677_at 10.33871645
1415678_at 11.29019626
1415679_at 11.56787774
1415680_at 9.64203424
1415681_at 10.41507853
1415682_at 8.72117454
1415683_at 11.99889524
1415684_at 8.935460126
1415685_at 9.658860965
1415686_at 10.62760127
1415687_a_at 12.85007706
1415688_at 10.7285427
1415689_s_at 9.783863127

Total number of rows: 45037

Table truncated, full table size 1024 Kbytes.




Supplementary file Size Download File type/resource
GSM859443_176_4119_21571_MF_HSC_3_Mouse430+2.CEL.gz 3.7 Mb (ftp)(http) CEL
Processed data included within Sample table

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