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Sample GSM860 Query DataSets for GSM860
Status Public on Feb 12, 2002
Title alpha factor release sample028
Sample type RNA
 
Channel 1
Source name asynchronous control
Organism Saccharomyces cerevisiae
Extracted molecule total RNA
 
Channel 2
Source name 28
Organism Saccharomyces cerevisiae
Extracted molecule total RNA
 
 
Description ScanAlyze version 2.33 scanning software was used.
Keywords = Cell-cycle
Keywords = Alpha factor block-release
Lot batch = y744n94
 
Submission date Feb 08, 2002
Last update date Nov 21, 2005
Organization Stanford Microarray Database (SMD)
E-mail(s) [email protected]
Phone 650-498-6012
URL http://genome-www5.stanford.edu/
Department Stanford University, School of Medicine
Street address 300 Pasteur Drive
City Stanford
State/province CA
ZIP/Postal code 94305
Country USA
 
Platform ID GPL59
Series (1)
GSE22 Alpha-factor block-release

Data table header descriptions
ID_REF reference identifier
CH1B_MEAN mean of channel 1 background pixels
CH1B_MEDIAN median of channel 1 background pixels
CH1D_MEAN difference between CH1I_MEAN and CH1B_MEAN
CH2I_MEAN mean of channel 2 signal pixels
CH2D_MEAN difference of CH2I_MEAN and CH2B_MEAN
CH2B_MEAN mean of channel 2 background pixels
CH2B_MEDIAN median of channel 2 background pixels
CH2BN_MEDIAN normalized CH2B_MEDIAN
CH2DN_MEAN normalized CH2D_MEAN
CH2IN_MEAN normalized CH2I_MEAN
CORR simple correlation coefficient of channel 1 and channel 2 pixels
FLAG user defined flag (default=0)
VALUE same as UNF_VALUE but with flagged values removed
PIX_RAT2_MEDIAN
PERGTBCH1I_1SD standard deviation of fraction of pixels greater than CH1B_MEAN
PERGTBCH2I_1SD standard deviation of fraction of pixels greater than CH2B_MEAN
RAT1_MEAN ratio of CH1D_MEAN to CH2D_MEAN
RAT1N_MEAN ratio of CH1DN_MEAN to CH2DN_MEAN
RAT2_MEAN arithmetic mean of ratios of CH2D_MEAN to CH1D_MEAN
RAT2N_MEAN arithmetic mean of ratios of CH2DN_MEAN to CH1DN_MEAN
REGR slope of the simple regression line of channel 2 to channel 1 pixels
TOT_BPIX total number of background pixels
TOT_SPIX total number of signal (spot) pixels
TOP vertical, short-axis spot ellipse minimum pixel coordinate
BOT vertical, short-axis spot ellipse maximum pixel coordinate
LEFT horizontal, long-axis spot ellipse minimum pixel coordinate
RIGHT horizontal, long-axis spot ellipse maximum pixel coordinate
UNF_VALUE aka LOG_RAT2N_MEAN, or log2 of ratio of CH2DN_MEAN and CH1DN_MEAN

Data table
ID_REF CH1B_MEAN CH1B_MEDIAN CH1D_MEAN CH2I_MEAN CH2D_MEAN CH2B_MEAN CH2B_MEDIAN CH2BN_MEDIAN CH2DN_MEAN CH2IN_MEAN CORR FLAG VALUE PIX_RAT2_MEDIAN PERGTBCH1I_1SD PERGTBCH2I_1SD RAT1_MEAN RAT1N_MEAN RAT2_MEAN RAT2N_MEAN REGR TOT_BPIX TOT_SPIX TOP BOT LEFT RIGHT UNF_VALUE
1 333 328 121 421 120 305 301 470 188 658 .965 0 .636 .583 10 12 1.008 .644 .992 1.554 .949 1130 80 26 36 68 78 .636
2 329 328 151 458 157 305 301 470 246 716 .769 -100 1.313 8 15 .962 .614 1.04 1.629 .76 930 80 26 36 78 88 .704
3 328 328 137 440 132 306 308 481 207 688 .934 -100 1.087 11 15 1.038 .662 .964 1.511 .897 825 80 26 36 88 98 .595
4 336 328 46 366 65 310 301 470 102 572 .856 0 1.149 1.531 11 13 .708 .451 1.413 2.217 1.057 825 80 26 36 99 109 1.149
5 335 328 137 752 451 308 301 470 705 1175 .874 0 2.363 2.372 16 31 .304 .194 3.292 5.146 2.78 835 80 26 36 109 119 2.363
6 339 328 74 343 42 310 301 470 66 536 .78 0 -.165 .875 15 11 1.762 1.121 .568 .892 .785 825 80 26 36 119 129 -.165
7 352 336 116 382 74 312 308 481 116 597 .863 0 0 .617 18 20 1.568 1 .638 1 .599 831 80 26 36 129 139 0
8 351 336 598 777 469 313 308 481 733 1214 .891 0 .294 .72 62 62 1.275 .816 .784 1.226 .711 831 80 26 36 139 149 .294
9 352 336 76 383 75 316 308 481 117 598 .862 0 .622 .964 16 17 1.013 .65 .987 1.539 .858 821 80 26 36 149 159 .622
10 353 336 61 365 57 314 308 481 89 570 .83 0 .545 1.08 13 16 1.07 .685 .934 1.459 .734 821 80 26 36 159 169 .545
11 339 336 63 372 64 312 308 481 100 581 .898 0 .667 1.125 16 18 .984 .63 1.016 1.587 .871 818 80 26 36 169 179 .667
12 334 336 77 375 67 306 308 481 105 586 .843 0 .447 .946 16 20 1.149 .733 .87 1.364 .901 825 80 26 36 179 189 .447
13 333 328 14 311 10 304 301 470 16 486 .467 0 .193 .648 3 2 1.4 .875 .714 1.143 .445 794 76 27 37 189 199 .193
14 338 328 88 386 85 309 301 470 133 603 .868 -100 1.05 8 11 1.035 .662 .966 1.511 .817 804 80 27 37 199 209 .596
15 345 336 264 578 277 316 301 470 433 903 .831 -100 1.22 21 23 .953 .61 1.049 1.64 .763 812 80 27 37 209 219 .714
16 348 336 225 573 272 317 301 470 425 895 .761 -100 .875 11 12 .827 .529 1.209 1.889 .784 815 80 27 37 219 229 .918
17 348 336 91 395 94 316 301 470 147 617 .832 0 .692 1.05 13 16 .968 .619 1.033 1.615 .782 815 80 27 37 229 239 .692
18 344 336 45 343 42 309 301 470 66 536 .822 0 .553 .875 11 12 1.071 .682 .933 1.467 .719 815 80 27 37 239 249 .553
19 338 336 20908 414 113 301 301 470 177 647 0 0 -6.884 .007 66 27 185.027 118.124 .005 .008 0 815 80 27 37 249 259 -6.884
20 336 336 396 1152 851 301 301 470 1330 1800 .878 0 1.748 1.891 52 61 .465 .298 2.149 3.359 1.995 815 80 27 37 259 269 1.748

Total number of rows: 7680

Table truncated, full table size 906 Kbytes.




Supplementary data files not provided
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