|
| Status |
Public on Aug 01, 2012 |
| Title |
Splenic Marginal Zone Lymphoma P20 |
| Sample type |
genomic |
| |
|
| Channel 1 |
| Source name |
Splenic Marginal Zone Lymphoma P20
|
| Organism |
Homo sapiens |
| Characteristics |
disease state: Splenic Marginal Zone Lymphoma
|
| Extracted molecule |
genomic DNA |
| Extraction protocol |
genomic DNA were extracted from mononuclear cells of Splenic Mariginal Zone Lymphoma patients obtained from spleen, peripheral blood or bone marrow using standard methods
|
| Label |
Cy3
|
| Label protocol |
genomic DNA from SMZL samples and reference genomic DNA were labeled by random priming using Cy3 and Cy5, respectively
|
| |
|
| Channel 2 |
| Source name |
reference genomic DNA
|
| Organism |
Homo sapiens |
| Characteristics |
sample type: reference
|
| Extracted molecule |
genomic DNA |
| Extraction protocol |
genomic DNA were extracted from mononuclear cells of Splenic Mariginal Zone Lymphoma patients obtained from spleen, peripheral blood or bone marrow using standard methods
|
| Label |
Cy5
|
| Label protocol |
genomic DNA from SMZL samples and reference genomic DNA were labeled by random priming using Cy3 and Cy5, respectively
|
| |
|
| |
| Hybridization protocol |
Hybridization methods and analytical procedures have been described elsewhere: Snijder AM, Nowak N, Segraves R, et al. Assembly of microarrays for genome-wide measurement of DNA copy number. Nat Genet. 2001;29:263-264.
|
| Scan protocol |
Images of the arrays were captured using a custom-built CCD camera
|
| Data processing |
UCSF SPOT software was used to analyze the images
|
| |
|
| Submission date |
Jan 26, 2012 |
| Last update date |
Aug 01, 2012 |
| Contact name |
Vicente Jose Fresquet |
| E-mail(s) |
[email protected]
|
| Phone |
34-948-194700
|
| Fax |
34-948-194714
|
| Organization name |
Center for Applied Medical Research (Cima)
|
| Department |
Division of Oncology
|
| Lab |
Molecular Oncology
|
| Street address |
Av Pio XII 55
|
| City |
Pamplona |
| State/province |
Navarra |
| ZIP/Postal code |
31008 |
| Country |
Spain |
| |
|
| Platform ID |
GPL3869 |
| Series (2) |
| GSE35367 |
INTEGRATIVE ONCOGENOMIC AND HIGH-THROUGHPUT SEQUENCING ANALYSES OF THE COMMONLY DELETED REGION IN CHROMOSOME 7q32 IN SPLENIC MARGINAL ZONE LYMPHOMA (CGH) |
| GSE35383 |
INTEGRATIVE ONCOGENOMIC AND HIGH-THROUGHPUT SEQUENCING ANALYSES OF THE COMMONLY DELETED REGION IN CHROMOSOME 7q32 IN SPLENIC MARGINAL ZONE LYMPHOMA |
|
