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Sample GSM878 Query DataSets for GSM878
Status Public on Feb 12, 2002
Title Nitrogen Depletion 2 d
Sample type RNA
 
Channel 1
Source name 0 d
Organism Saccharomyces cerevisiae
Extracted molecule total RNA
 
Channel 2
Source name 2 d
Organism Saccharomyces cerevisiae
Extracted molecule total RNA
 
 
Description This experiment was an out file converted from rana. The original files were not provided to load this experiment in Oracle. Category and Subcategories were made by curators
ScanAlyze version unknown scanning software was used.
Keywords = starvation
Keywords = YPD-stationary-phase
Lot batch = y12a34
 
Submission date Feb 08, 2002
Last update date Nov 21, 2005
Organization Stanford Microarray Database (SMD)
E-mail(s) [email protected]
Phone 650-498-6012
URL http://genome-www5.stanford.edu/
Department Stanford University, School of Medicine
Street address 300 Pasteur Drive
City Stanford
State/province CA
ZIP/Postal code 94305
Country USA
 
Platform ID GPL52
Series (1)
GSE18 Yeast Stress Response

Data table header descriptions
ID_REF reference identifier
CH1B_MEAN mean of channel 1 background pixels
CH1B_MEDIAN median of channel 1 background pixels
CH1D_MEAN difference between CH1I_MEAN and CH1B_MEAN
CH2I_MEAN mean of channel 2 signal pixels
CH2D_MEAN difference of CH2I_MEAN and CH2B_MEAN
CH2B_MEAN mean of channel 2 background pixels
CH2B_MEDIAN median of channel 2 background pixels
CH2BN_MEDIAN normalized CH2B_MEDIAN
CH2DN_MEAN normalized CH2D_MEAN
CH2IN_MEAN normalized CH2I_MEAN
CORR simple correlation coefficient of channel 1 and channel 2 pixels
FLAG user defined flag (default=0)
VALUE same as UNF_VALUE but with flagged values removed
PIX_RAT2_MEDIAN
PERGTBCH1I_1SD standard deviation of fraction of pixels greater than CH1B_MEAN
PERGTBCH2I_1SD standard deviation of fraction of pixels greater than CH2B_MEAN
RAT1_MEAN ratio of CH1D_MEAN to CH2D_MEAN
RAT1N_MEAN ratio of CH1DN_MEAN to CH2DN_MEAN
RAT2_MEAN arithmetic mean of ratios of CH2D_MEAN to CH1D_MEAN
RAT2N_MEAN arithmetic mean of ratios of CH2DN_MEAN to CH1DN_MEAN
REGR slope of the simple regression line of channel 2 to channel 1 pixels
TOT_BPIX total number of background pixels
TOT_SPIX total number of signal (spot) pixels
TOP vertical, short-axis spot ellipse minimum pixel coordinate
BOT vertical, short-axis spot ellipse maximum pixel coordinate
LEFT horizontal, long-axis spot ellipse minimum pixel coordinate
RIGHT horizontal, long-axis spot ellipse maximum pixel coordinate
UNF_VALUE aka LOG_RAT2N_MEAN, or log2 of ratio of CH2DN_MEAN and CH1DN_MEAN

Data table
ID_REF CH1B_MEAN CH1B_MEDIAN CH1D_MEAN CH2I_MEAN CH2D_MEAN CH2B_MEAN CH2B_MEDIAN CH2BN_MEDIAN CH2DN_MEAN CH2IN_MEAN CORR FLAG VALUE PIX_RAT2_MEDIAN PERGTBCH1I_1SD PERGTBCH2I_1SD RAT1_MEAN RAT1N_MEAN RAT2_MEAN RAT2N_MEAN REGR TOT_BPIX TOT_SPIX TOP BOT LEFT RIGHT UNF_VALUE
1 290 63 2008 1672 1599 202 73 87 1904 1990 .84 0 -.077 .94 90 88 1.256 1.055 .796 .948 .52 1216 145 99 114 152 167 -.077
2 536 63 975 757 681 316 76 90 811 901 .83 0 -.266 1.11 54 52 1.432 1.203 .698 .832 .45 1049 145 98 113 169 184 -.266
3 435 59 4630 3757 3682 281 75 89 4383 4473 0 0 -.079 .95 90 88 1.257 1.056 .795 .947 0 1040 145 98 113 187 202 -.079
4 240 58 886 858 787 176 71 85 937 1021 .87 0 .081 1.23 51 53 1.126 .946 .888 1.057 .59 1027 145 98 113 204 219 .081
5 243 58 4552 3637 3567 166 70 83 4246 4330 0 0 -.1 .93 92 91 1.276 1.072 .784 .933 0 1062 145 97 112 222 237 -.1
6 142 55 688 640 572 120 68 81 681 762 .8 0 -.015 .93 46 47 1.203 1.01 .831 .99 .54 1049 145 97 112 240 255 -.015
7 95 54 -7 72 4 102 68 81 5 86 .03 -100 1.29 18 23 .03 1027 145 97 112 257 272
8 101 56 1 65 -3 99 68 81 -4 77 .06 -100 .8 21 17 .05 1049 145 96 111 275 290
9 255 56 -2 63 -3 102 66 79 -4 75 -.08 -100 1.02 21 19 -.07 1040 145 96 111 292 307
10 312 57 0 63 -1 185 64 76 -1 75 .24 -100 1.59 21 22 .18 1040 145 96 111 310 325
11 311 55 5 66 -1 255 67 80 -1 79 .02 -100 1.45 25 20 .02 1027 145 96 111 328 343
12 262 52 1 58 -5 160 63 75 -6 69 .14 -100 1.5 25 16 .14 1049 145 95 110 345 360
13 141 52 15 57 -3 102 60 71 -4 68 .14 -100 1.37 29 21 .09 1040 145 95 110 363 378
14 101 52 0 57 0 93 57 68 0 68 -.1 -100 1.64 20 23 -.09 1027 145 95 110 380 395
15 75 51 -3 54 -1 76 55 65 -1 64 .04 -100 1 18 21 .04 1062 145 94 109 398 413
16 69 53 -3 53 -2 74 55 65 -2 63 .02 -100 1.18 22 22 .03 1049 145 94 109 416 431
17 64 49 8 63 8 70 55 65 10 75 .09 -100 1.59 30 30 1 .84 1 1.19 .08 1027 145 94 109 433 448 .252
18 63 46 10 56 2 65 54 64 2 67 .05 -100 1.72 30 24 5 4.2 .2 .238 .05 1017 145 94 109 451 466 -2.07
19 61 46 2 53 2 61 51 61 2 63 .11 -100 1.83 18 26 1 .84 1 1.19 .11 1049 145 93 108 468 483 .252
20 63 47 3 55 5 58 50 60 6 65 .12 -100 1.12 26 28 .6 .504 1.667 1.984 .11 1053 145 93 108 486 501 .989

Total number of rows: 9216

Table truncated, full table size 1049 Kbytes.




Supplementary data files not provided
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