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Sample GSM879 Query DataSets for GSM879
Status Public on Feb 12, 2002
Title Nitrogen Depletion 3 d
Sample type RNA
 
Channel 1
Source name 0 d
Organism Saccharomyces cerevisiae
Extracted molecule total RNA
 
Channel 2
Source name 3 d
Organism Saccharomyces cerevisiae
Extracted molecule total RNA
 
 
Description This experiment was an out file converted from rana. The original files were not provided to load this experiment in Oracle. Category and Subcategories were made by curators
ScanAlyze version unknown scanning software was used.
Keywords = starvation
Keywords = YPD-stationary-phase
Lot batch = y12a35
 
Submission date Feb 08, 2002
Last update date Nov 21, 2005
Organization Stanford Microarray Database (SMD)
E-mail(s) [email protected]
Phone 650-498-6012
URL http://genome-www5.stanford.edu/
Department Stanford University, School of Medicine
Street address 300 Pasteur Drive
City Stanford
State/province CA
ZIP/Postal code 94305
Country USA
 
Platform ID GPL52
Series (1)
GSE18 Yeast Stress Response

Data table header descriptions
ID_REF reference identifier
CH1B_MEAN mean of channel 1 background pixels
CH1B_MEDIAN median of channel 1 background pixels
CH1D_MEAN difference between CH1I_MEAN and CH1B_MEAN
CH2I_MEAN mean of channel 2 signal pixels
CH2D_MEAN difference of CH2I_MEAN and CH2B_MEAN
CH2B_MEAN mean of channel 2 background pixels
CH2B_MEDIAN median of channel 2 background pixels
CH2BN_MEDIAN normalized CH2B_MEDIAN
CH2DN_MEAN normalized CH2D_MEAN
CH2IN_MEAN normalized CH2I_MEAN
CORR simple correlation coefficient of channel 1 and channel 2 pixels
FLAG user defined flag (default=0)
VALUE same as UNF_VALUE but with flagged values removed
PIX_RAT2_MEDIAN
PERGTBCH1I_1SD standard deviation of fraction of pixels greater than CH1B_MEAN
PERGTBCH2I_1SD standard deviation of fraction of pixels greater than CH2B_MEAN
RAT1_MEAN ratio of CH1D_MEAN to CH2D_MEAN
RAT1N_MEAN ratio of CH1DN_MEAN to CH2DN_MEAN
RAT2_MEAN arithmetic mean of ratios of CH2D_MEAN to CH1D_MEAN
RAT2N_MEAN arithmetic mean of ratios of CH2DN_MEAN to CH1DN_MEAN
REGR slope of the simple regression line of channel 2 to channel 1 pixels
TOT_BPIX total number of background pixels
TOT_SPIX total number of signal (spot) pixels
TOP vertical, short-axis spot ellipse minimum pixel coordinate
BOT vertical, short-axis spot ellipse maximum pixel coordinate
LEFT horizontal, long-axis spot ellipse minimum pixel coordinate
RIGHT horizontal, long-axis spot ellipse maximum pixel coordinate
UNF_VALUE aka LOG_RAT2N_MEAN, or log2 of ratio of CH2DN_MEAN and CH1DN_MEAN

Data table
ID_REF CH1B_MEAN CH1B_MEDIAN CH1D_MEAN CH2I_MEAN CH2D_MEAN CH2B_MEAN CH2B_MEDIAN CH2BN_MEDIAN CH2DN_MEAN CH2IN_MEAN CORR FLAG VALUE PIX_RAT2_MEDIAN PERGTBCH1I_1SD PERGTBCH2I_1SD RAT1_MEAN RAT1N_MEAN RAT2_MEAN RAT2N_MEAN REGR TOT_BPIX TOT_SPIX TOP BOT LEFT RIGHT UNF_VALUE
1 220 58 2111 2431 2379 175 52 40 1830 1870 .85 0 -.206 .83 92 90 .887 1.154 1.127 .867 1.11 1206 145 65 80 142 157 -.206
2 367 57 732 722 672 261 50 38 517 555 .85 0 -.502 .77 52 54 1.089 1.416 .918 .706 .96 1049 145 64 79 159 174 -.502
3 334 56 5787 6672 6622 260 50 38 5094 5132 0 0 -.184 .9 91 92 .874 1.136 1.144 .88 0 1058 145 64 79 177 192 -.184
4 131 52 523 702 653 107 49 38 502 540 .86 0 -.058 .87 46 50 .801 1.041 1.249 .96 1.33 1049 145 64 79 194 209 -.058
5 115 53 5565 6918 6866 91 52 40 5282 5322 0 0 -.075 .96 94 98 .811 1.054 1.234 .949 0 1062 145 64 79 212 227 -.075
6 72 51 786 1177 1119 75 58 45 861 905 .87 0 .131 1.06 59 57 .702 .913 1.424 1.095 1.61 1049 145 64 79 230 245 .131
7 64 52 1 67 9 74 58 45 7 52 -.1 -100 1.94 20 25 .111 .144 9 6.923 -.17 1049 145 64 79 247 262 2.791
8 67 54 11 65 5 77 60 46 4 50 .03 -100 .77 30 26 2.2 2.86 .455 .35 .04 1058 145 64 79 265 280 -1.516
9 88 53 2 67 7 75 60 46 5 52 .31 -100 1.37 17 28 .286 .371 3.5 2.692 .39 1049 145 64 79 282 297 1.429
10 114 53 6 77 13 105 64 49 10 59 -.1 -100 .86 29 30 .462 .6 2.167 1.667 -.18 1062 145 64 79 300 315 .737
11 98 55 0 74 7 116 67 52 5 57 .1 -100 1.02 19 28 .17 1049 145 64 79 318 333
12 90 55 0 73 8 110 65 50 6 56 -.03 -100 1.19 21 30 -.05 1040 145 64 79 335 350
13 93 55 -7 67 5 105 62 48 4 52 .04 -100 .55 17 24 .08 1036 145 64 79 353 368
14 76 52 11 61 1 81 60 46 1 47 -.02 -100 .95 26 15 11 14.3 .091 .07 -.02 1017 145 64 79 370 385 -3.838
15 73 53 -3 76 15 83 61 47 12 58 .3 -100 .83 15 34 .54 1030 145 64 79 388 403
16 65 53 1 69 10 81 59 45 8 53 .02 -100 1.04 23 28 .1 .13 10 7.692 .03 1017 145 64 79 406 421 2.943
17 69 54 -2 54 -4 75 58 45 -3 42 .03 -100 1.24 17 21 .05 1017 145 64 79 423 438
18 75 55 9 64 2 83 62 48 2 49 .2 -100 .91 27 25 4.5 5.85 .222 .171 .15 1027 145 64 79 441 456 -2.548
19 84 57 12 73 8 84 65 50 6 56 0 -100 .62 28 28 1.5 1.95 .667 .513 0 1017 145 64 79 458 473 -.963
20 88 58 5 76 12 92 64 49 9 58 .04 -100 .79 25 28 .417 .542 2.4 1.846 .06 1062 145 63 78 476 491 .885

Total number of rows: 9216

Table truncated, full table size 1058 Kbytes.




Supplementary data files not provided
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