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Sample GSM880 Query DataSets for GSM880
Status Public on Feb 12, 2002
Title Nitrogen Depletion 30 min.
Sample type RNA
 
Channel 1
Source name 0 min.
Organism Saccharomyces cerevisiae
Extracted molecule total RNA
 
Channel 2
Source name 30 min.
Organism Saccharomyces cerevisiae
Extracted molecule total RNA
 
 
Description This experiment was an out file converted from rana. The original files were not provided to load this experiment in Oracle. Category and Subcategories were made by curators
ScanAlyze version unknown scanning software was used.
Keywords = starvation
Keywords = YPD-stationary-phase
Lot batch = y12a27
 
Submission date Feb 08, 2002
Last update date Nov 21, 2005
Organization Stanford Microarray Database (SMD)
E-mail(s) [email protected]
Phone 650-498-6012
URL http://genome-www5.stanford.edu/
Department Stanford University, School of Medicine
Street address 300 Pasteur Drive
City Stanford
State/province CA
ZIP/Postal code 94305
Country USA
 
Platform ID GPL52
Series (1)
GSE18 Yeast Stress Response

Data table header descriptions
ID_REF reference identifier
CH1B_MEAN mean of channel 1 background pixels
CH1B_MEDIAN median of channel 1 background pixels
CH1D_MEAN difference between CH1I_MEAN and CH1B_MEAN
CH2I_MEAN mean of channel 2 signal pixels
CH2D_MEAN difference of CH2I_MEAN and CH2B_MEAN
CH2B_MEAN mean of channel 2 background pixels
CH2B_MEDIAN median of channel 2 background pixels
CH2BN_MEDIAN normalized CH2B_MEDIAN
CH2DN_MEAN normalized CH2D_MEAN
CH2IN_MEAN normalized CH2I_MEAN
CORR simple correlation coefficient of channel 1 and channel 2 pixels
FLAG user defined flag (default=0)
VALUE same as UNF_VALUE but with flagged values removed
PIX_RAT2_MEDIAN
PERGTBCH1I_1SD standard deviation of fraction of pixels greater than CH1B_MEAN
PERGTBCH2I_1SD standard deviation of fraction of pixels greater than CH2B_MEAN
RAT1_MEAN ratio of CH1D_MEAN to CH2D_MEAN
RAT1N_MEAN ratio of CH1DN_MEAN to CH2DN_MEAN
RAT2_MEAN arithmetic mean of ratios of CH2D_MEAN to CH1D_MEAN
RAT2N_MEAN arithmetic mean of ratios of CH2DN_MEAN to CH1DN_MEAN
REGR slope of the simple regression line of channel 2 to channel 1 pixels
TOT_BPIX total number of background pixels
TOT_SPIX total number of signal (spot) pixels
TOP vertical, short-axis spot ellipse minimum pixel coordinate
BOT vertical, short-axis spot ellipse maximum pixel coordinate
LEFT horizontal, long-axis spot ellipse minimum pixel coordinate
RIGHT horizontal, long-axis spot ellipse maximum pixel coordinate
UNF_VALUE aka LOG_RAT2N_MEAN, or log2 of ratio of CH2DN_MEAN and CH1DN_MEAN

Data table
ID_REF CH1B_MEAN CH1B_MEDIAN CH1D_MEAN CH2I_MEAN CH2D_MEAN CH2B_MEAN CH2B_MEDIAN CH2BN_MEDIAN CH2DN_MEAN CH2IN_MEAN CORR FLAG VALUE PIX_RAT2_MEDIAN PERGTBCH1I_1SD PERGTBCH2I_1SD RAT1_MEAN RAT1N_MEAN RAT2_MEAN RAT2N_MEAN REGR TOT_BPIX TOT_SPIX TOP BOT LEFT RIGHT UNF_VALUE
1 275 189 2418 3292 3077 293 215 215 3077 3292 .85 0 .348 1.24 92 94 .786 .786 1.273 1.273 1.02 1206 145 117 132 110 125 .348
2 385 197 1126 1712 1491 360 221 221 1491 1712 .95 0 .405 1.2 30 31 .755 .755 1.324 1.324 1.22 1040 145 116 131 127 142 .405
3 421 174 5695 6979 6749 422 230 230 6749 6979 0 0 .245 1.19 94 92 .844 .844 1.185 1.185 0 1026 145 116 131 145 160 .245
4 317 160 1501 1972 1739 401 233 233 1739 1972 .91 0 .212 1.26 49 41 .863 .863 1.159 1.159 1.04 1040 145 115 130 162 177 .212
5 223 155 5070 6063 5829 319 234 234 5829 6063 0 0 .201 1.15 93 91 .87 .87 1.15 1.15 0 1036 145 115 130 180 195 .201
6 187 150 1524 1974 1742 290 232 232 1742 1974 .91 0 .193 1.11 51 41 .875 .875 1.143 1.143 1.05 1040 145 114 129 197 212 .193
7 165 145 2 228 -14 261 242 242 -14 228 .06 -100 1.11 14 3 .05 1027 145 114 129 215 230
8 158 144 30 292 49 260 243 243 49 292 .67 0 .708 1.28 14 8 .612 .612 1.633 1.633 .74 1040 145 113 128 232 247 .708
9 211 143 -1 250 6 270 244 244 6 250 .02 -100 1.23 11 6 .01 1027 145 113 128 250 265
10 281 146 596 751 506 330 245 245 506 751 0 0 -.236 .65 19 12 1.178 1.178 .849 .849 0 1040 145 112 127 267 282 -.236
11 288 145 -10 244 2 364 242 242 2 244 .11 -100 .86 8 1 .1 1027 145 112 127 285 300
12 231 139 -5 232 -2 298 234 234 -2 232 .22 -100 .67 13 3 .21 1040 145 111 126 302 317
13 185 138 -1 239 9 258 230 230 9 239 .04 -100 .96 12 6 .04 1027 145 111 126 320 335
14 162 134 -4 234 2 255 232 232 2 234 .14 -100 .89 16 5 .15 1049 145 110 125 337 352
15 164 135 5 232 -4 260 236 236 -4 232 .06 -100 .55 13 2 .04 1040 145 110 125 355 370
16 156 131 8 231 -3 256 234 234 -3 231 .24 -100 .56 15 3 .21 1059 145 109 124 372 387
17 158 139 17 260 6 266 254 254 6 260 .13 -100 1.08 20 6 2.833 2.833 .353 .353 .13 1040 145 109 124 390 405 -1.503
18 172 155 39 310 34 292 276 276 34 310 .37 0 -.198 1.08 22 8 1.147 1.147 .872 .872 .31 1027 145 109 124 407 422 -.198
19 183 152 5 289 16 292 273 273 16 289 .05 -100 1.08 17 3 .313 .313 3.2 3.2 .05 1040 145 108 123 425 440 1.678
20 175 140 11 250 -9 273 259 259 -9 250 .39 -100 .92 17 3 .36 1027 145 108 123 442 457

Total number of rows: 9216

Table truncated, full table size 1070 Kbytes.




Supplementary data files not provided
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