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GEO accession:
Sample GSM88279
Query DataSets for GSM88279
Status
Public on Feb 15, 2006
Title
Exp Pt 1(dvts1-1 VTS1 )
Sample type
RNA
Source name
vts1 deletion in BMA64
Organism
Saccharomyces cerevisiae
Characteristics
vts1 deletion in BMA64
Treatment protocol
VTS1 Chemical Transfection
Growth protocol
Cells were grown in steady state conditions in SD media at 30 degrees. Cells were harvested at OD600=0.4.
Extracted molecule
total RNA
Label
Biotin
Description
The experiment was designed to look for genes up/downregulated in the absense of Vts1p compared to wild-type cells grown in steady state conditions.
Data processing
MAS5 Statistical Algorithm
Submission date
Dec 16, 2005
Last update date
Dec 19, 2005
Contact name
Guillaume Francois Chanfreau
E-mail(s)
[email protected]
Phone
1-310-825-4399
Organization name
UCLA
Department
Chemistry and Biochemistry
Street address
607 Charles E. Young Drive East
City
Los Angeles
State/province
CA
ZIP/Postal code
90095-1569
Country
USA
Platform ID
GPL90
Series (1)
GSE3859
Wild type versus delta vts1
Data table header descriptions
ID_REF
VALUE
Signal
ABS_CALL
Detection, MAS5
DETECTION P-VALUE
Detection p-value, MAS5
Data table
ID_REF
VALUE
ABS_CALL
DETECTION P-VALUE
AFFX-MurIL2_at
140.9
A
0.783476
AFFX-MurIL10_at
22.6
A
0.937071
AFFX-MurIL4_at
30.8
A
0.760937
AFFX-MurFAS_at
17.4
A
0.978098
AFFX-BioB-5_at
596.1
P
0.015183
AFFX-BioB-M_at
662.2
P
0.004998
AFFX-BioB-3_at
738.7
P
0.000857
AFFX-BioC-5_at
1237.1
P
0.000225
AFFX-BioC-3_at
1440.2
P
0.000147
AFFX-BioDn-5_at
2284.5
P
0.00006
AFFX-BioDn-3_at
10060.8
P
0.000044
AFFX-CreX-5_at
12847.6
P
0.000044
AFFX-CreX-3_at
20979.8
P
0.000044
AFFX-BioB-5_st
131.1
A
0.60308
AFFX-BioB-M_st
30
A
0.921998
AFFX-BioB-3_st
53.8
A
0.783476
AFFX-BioC-5_st
66
A
0.843268
AFFX-BioC-3_st
22.9
A
0.98333
AFFX-BioDn-5_st
217
A
0.382599
AFFX-BioDn-3_st
82.9
A
0.672921
Total number of rows:
9335
Table truncated, full table size
232 Kbytes
.
Supplementary data files not provided
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