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Sample GSM883 Query DataSets for GSM883
Status Public on Feb 12, 2002
Title heat shock 17 to 37, 20 minutes
Sample type RNA
 
Channel 1
Source name 17 t0
Organism Saccharomyces cerevisiae
Extracted molecule total RNA
 
Channel 2
Source name 37 t20
Organism Saccharomyces cerevisiae
Extracted molecule total RNA
 
 
Description This experiment was an out file converted from rana. The original files were not provided to load this experiment in Oracle. Category and Subcategories were made by curators
ScanAlyze version unknown scanning software was used.
Keywords = starvation
Keywords = YPD-stationary-phase
Lot batch = y11n122
 
Submission date Feb 08, 2002
Last update date Nov 21, 2005
Organization Stanford Microarray Database (SMD)
E-mail(s) [email protected]
Phone 650-498-6012
URL http://genome-www5.stanford.edu/
Department Stanford University, School of Medicine
Street address 300 Pasteur Drive
City Stanford
State/province CA
ZIP/Postal code 94305
Country USA
 
Platform ID GPL51
Series (1)
GSE18 Yeast Stress Response

Data table header descriptions
ID_REF reference identifier
CH1B_MEAN mean of channel 1 background pixels
CH1B_MEDIAN median of channel 1 background pixels
CH1D_MEAN difference between CH1I_MEAN and CH1B_MEAN
CH2I_MEAN mean of channel 2 signal pixels
CH2D_MEAN difference of CH2I_MEAN and CH2B_MEAN
CH2B_MEAN mean of channel 2 background pixels
CH2B_MEDIAN median of channel 2 background pixels
CH2BN_MEDIAN normalized CH2B_MEDIAN
CH2DN_MEAN normalized CH2D_MEAN
CH2IN_MEAN normalized CH2I_MEAN
CORR simple correlation coefficient of channel 1 and channel 2 pixels
FLAG user defined flag (default=0)
VALUE same as UNF_VALUE but with flagged values removed
PIX_RAT2_MEDIAN
PERGTBCH1I_1SD standard deviation of fraction of pixels greater than CH1B_MEAN
PERGTBCH2I_1SD standard deviation of fraction of pixels greater than CH2B_MEAN
RAT1_MEAN ratio of CH1D_MEAN to CH2D_MEAN
RAT1N_MEAN ratio of CH1DN_MEAN to CH2DN_MEAN
RAT2_MEAN arithmetic mean of ratios of CH2D_MEAN to CH1D_MEAN
RAT2N_MEAN arithmetic mean of ratios of CH2DN_MEAN to CH1DN_MEAN
REGR slope of the simple regression line of channel 2 to channel 1 pixels
TOT_BPIX total number of background pixels
TOT_SPIX total number of signal (spot) pixels
TOP vertical, short-axis spot ellipse minimum pixel coordinate
BOT vertical, short-axis spot ellipse maximum pixel coordinate
LEFT horizontal, long-axis spot ellipse minimum pixel coordinate
RIGHT horizontal, long-axis spot ellipse maximum pixel coordinate
UNF_VALUE aka LOG_RAT2N_MEAN, or log2 of ratio of CH2DN_MEAN and CH1DN_MEAN

Data table
ID_REF CH1B_MEAN CH1B_MEDIAN CH1D_MEAN CH2I_MEAN CH2D_MEAN CH2B_MEAN CH2B_MEDIAN CH2BN_MEDIAN CH2DN_MEAN CH2IN_MEAN CORR FLAG VALUE PIX_RAT2_MEDIAN PERGTBCH1I_1SD PERGTBCH2I_1SD RAT1_MEAN RAT1N_MEAN RAT2_MEAN RAT2N_MEAN REGR TOT_BPIX TOT_SPIX TOP BOT LEFT RIGHT UNF_VALUE
1 6 5 47 14 7 8 7 7 7 14 .55 0 -2.733 .18 82 56 6.714 6.647 .149 .15 .12 1151 177 73 88 77 92 -2.733
2 6 5 6 13 5 8 8 8 5 13 .7 0 -.249 .75 44 36 1.2 1.188 .833 .842 .6 928 177 73 88 94 109 -.249
3 5 4 57 36 29 8 7 7 29 36 .85 0 -.96 .54 74 69 1.966 1.946 .509 .514 .47 919 177 73 88 112 127 -.96
4 5 4 4 9 2 7 7 7 2 9 .12 0 -.986 .88 37 38 2 1.98 .5 .505 .06 906 177 73 88 129 144 -.986
5 5 4 52 29 23 7 6 6 23 29 .78 0 -1.162 .52 73 64 2.261 2.238 .442 .447 .38 928 177 72 87 147 162 -1.162
6 5 4 6 8 2 7 6 6 2 8 .47 0 -1.57 .75 43 33 3 2.97 .333 .337 .2 919 177 72 87 164 179 -1.57
7 5 4 2 8 1 7 7 7 1 8 -.08 0 -.986 .9 38 34 2 1.98 .5 .505 -.08 919 177 72 87 182 197 -.986
8 5 4 3 9 2 7 7 7 2 9 .15 0 -.57 .85 43 35 1.5 1.485 .667 .673 .14 906 177 72 87 200 215 -.57
9 5 4 0 7 1 7 6 6 1 7 .03 0 1.43 29 32 .04 928 177 71 86 217 232
10 5 4 0 7 1 7 6 6 1 7 -.03 0 1.5 28 33 -.03 919 177 71 86 235 250
11 5 5 0 8 2 7 6 6 2 8 -.08 0 1.5 26 32 -.1 906 177 71 86 252 267
12 5 5 0 7 1 7 6 6 1 7 0 0 1 29 32 0 928 177 70 85 270 285
13 5 4 2 7 1 7 6 6 1 7 .06 0 -.986 1.38 43 32 2 1.98 .5 .505 .07 928 177 70 85 287 302 -.986
14 4 4 0 7 1 7 6 6 1 7 .04 0 1.43 27 31 .05 932 177 70 85 305 320
15 4 3 2 6 0 7 6 6 0 6 .06 0 .89 54 22 .07 915 177 70 85 323 338
16 4 4 1 7 1 7 6 6 1 7 .04 0 .014 1.2 37 30 1 .99 1 1.01 .05 928 177 69 84 340 355 .014
17 5 4 1 7 1 7 6 6 1 7 -.03 0 .014 1.17 36 36 1 .99 1 1.01 -.03 919 177 69 84 358 373 .014
18 5 4 0 7 0 7 7 7 0 7 -.03 0 1 28 29 -.03 906 177 69 84 375 390
19 5 4 0 8 1 7 7 7 1 8 -.02 0 1.5 28 29 -.02 909 177 69 84 393 408
20 5 4 0 8 1 8 7 7 1 8 .17 0 1.17 27 37 .23 937 177 68 83 411 426

Total number of rows: 9216

Table truncated, full table size 1015 Kbytes.




Supplementary data files not provided
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