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Sample GSM90293 Query DataSets for GSM90293
Status Public on Jan 04, 2006
Title Transgenic LEC2GR Seedling 0h Dex 2
Sample type RNA
 
Source name Transgenic LEC2-GR Seedling
Organism Arabidopsis thaliana
Characteristics Genotype: Ws-0, 35S:LEC2-GR; Tissue: 8 day old seedling; Replicate: 2 of 2
Treatment protocol As per Braybrook et al (PNAS, 2006)
Growth protocol As per Braybrook et al (PNAS, 2006)
Extracted molecule polyA RNA
Extraction protocol As per Stone et al (PNAS, 2001)
Label biotin
Label protocol standard Affymetrix procedures
 
Hybridization protocol standard Affymetrix procedures
Scan protocol standard Affymetrix procedures
Description 8 day old LEC2-GR seedlings no treatment
Data processing MAS 5.0
 
Submission date Dec 31, 2005
Last update date Aug 28, 2018
Contact name Siobhan A Braybrook
E-mail(s) [email protected]
Organization name University of California, Davis
Department Plant Biology
Lab Harada Lab
Street address 1 Shields Ave
City Davis
State/province CA
ZIP/Postal code 95616
Country USA
 
Platform ID GPL198
Series (1)
GSE3959 RNA changes induced by LEAFY COTYLEDON2 activity in Arabidopsis seedlings
Relations
Reanalyzed by GSE119083

Data table header descriptions
ID_REF Affymetrix probe ID
VALUE This is the final calculated measurement for each probe set identifier that has been made comparable across all samples and rows
ABS_CALL A qualitative measurement indicating if the probe set is detected(Present ; P), not detected (Absent; A), or marginally detected(Marginal; M)
DETECTION P-VALUE A p-value indicating the significance of the Detection call

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-BioB-5_at 1973.8 P 0.000044
AFFX-BioB-M_at 4023.5 P 0.000044
AFFX-BioB-3_at 3688.7 P 0.000044
AFFX-BioC-5_at 5787 P 0.000044
AFFX-BioC-3_at 3326.3 P 0.000044
AFFX-BioDn-5_at 5544.2 P 0.000044
AFFX-BioDn-3_at 26604.5 P 0.000044
AFFX-CreX-5_at 41255.5 P 0.000044
AFFX-CreX-3_at 52661.3 P 0.000044
AFFX-DapX-5_at 28.6 A 0.262827
AFFX-DapX-M_at 10.3 A 0.9273
AFFX-DapX-3_at 6.8 A 0.9273
AFFX-LysX-5_at 52 A 0.262827
AFFX-LysX-M_at 5.2 A 0.960339
AFFX-LysX-3_at 8 A 0.814869
AFFX-PheX-5_at 5.3 A 0.973889
AFFX-PheX-M_at 4.1 A 0.904333
AFFX-PheX-3_at 16.3 A 0.749204
AFFX-ThrX-5_at 7.6 A 0.843268
AFFX-ThrX-M_at 11.5 A 0.724854

Total number of rows: 22810

Table truncated, full table size 588 Kbytes.




Supplementary file Size Download File type/resource
GSM90293.CEL.gz 3.2 Mb (ftp)(http) CEL
GSM90293.EXP.gz 478 b (ftp)(http) EXP

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