NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM90294 Query DataSets for GSM90294
Status Public on Jan 04, 2006
Title Transgenic LEC2GR Seedling 1h Dex 1
Sample type RNA
 
Source name Transgenic LEC2-GR Seedling
Organism Arabidopsis thaliana
Characteristics Genotype: Ws-0, 35S:LEC2-GR; Tissue: 8 day old seedling; Replicate: 1 of 2
Treatment protocol As per Braybrook et al (PNAS, 2006)
Growth protocol As per Braybrook et al (PNAS, 2006)
Extracted molecule polyA RNA
Extraction protocol As per Stone et al (PNAS, 2001)
Label biotin
Label protocol standard Affymetrix procedures
 
Hybridization protocol standard Affymetrix procedures
Scan protocol standard Affymetrix procedures
Description 8 day old LEC2-GR seedlings 1 hour Dexamethasone induction
Data processing MAS 5.0
 
Submission date Dec 31, 2005
Last update date Aug 28, 2018
Contact name Siobhan A Braybrook
E-mail(s) [email protected]
Organization name University of California, Davis
Department Plant Biology
Lab Harada Lab
Street address 1 Shields Ave
City Davis
State/province CA
ZIP/Postal code 95616
Country USA
 
Platform ID GPL198
Series (1)
GSE3959 RNA changes induced by LEAFY COTYLEDON2 activity in Arabidopsis seedlings
Relations
Reanalyzed by GSE119083

Data table header descriptions
ID_REF Affymetrix probe ID
VALUE This is the final calculated measurement for each probe set identifier that has been made comparable across all samples and rows
ABS_CALL A qualitative measurement indicating if the probe set is detected(Present ; P), not detected (Absent; A), or marginally detected(Marginal; M)
DETECTION P-VALUE A p-value indicating the significance of the Detection call

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-BioB-5_at 872.1 P 0.000225
AFFX-BioB-M_at 1780.5 P 0.000044
AFFX-BioB-3_at 1283 P 0.00006
AFFX-BioC-5_at 2279.7 P 0.000044
AFFX-BioC-3_at 1379.7 P 0.000052
AFFX-BioDn-5_at 2861.9 P 0.000044
AFFX-BioDn-3_at 11044.1 P 0.000044
AFFX-CreX-5_at 23828.4 P 0.000044
AFFX-CreX-3_at 29814.8 P 0.000044
AFFX-DapX-5_at 5.5 A 0.868639
AFFX-DapX-M_at 23.2 A 0.794268
AFFX-DapX-3_at 40.2 A 0.48511
AFFX-LysX-5_at 42.4 A 0.287743
AFFX-LysX-M_at 16.3 A 0.904333
AFFX-LysX-3_at 61.1 A 0.275146
AFFX-PheX-5_at 5.8 A 0.910522
AFFX-PheX-M_at 7.3 A 0.852061
AFFX-PheX-3_at 18.1 A 0.843268
AFFX-ThrX-5_at 7.8 A 0.883887
AFFX-ThrX-M_at 8.9 A 0.910522

Total number of rows: 22810

Table truncated, full table size 589 Kbytes.




Supplementary file Size Download File type/resource
GSM90294.CEL.gz 3.3 Mb (ftp)(http) CEL
GSM90294.EXP.gz 476 b (ftp)(http) EXP

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap