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Sample GSM90299 Query DataSets for GSM90299
Status Public on Jan 04, 2006
Title Wild-Type WS-O Seedling 4h Dex 2
Sample type RNA
 
Source name Wild-Type WS-O Seedling
Organism Arabidopsis thaliana
Characteristics Genotype: Ws-0, Wild-Type; Tissue: 8 day old seedling; Replicate: 2 of 2
Treatment protocol As per Braybrook et al (PNAS, 2006)
Growth protocol As per Braybrook et al (PNAS, 2006)
Extracted molecule polyA RNA
Extraction protocol As per Stone et al (PNAS, 2001)
Label biotin
Label protocol standard Affymetrix procedures
 
Hybridization protocol standard Affymetrix procedures
Scan protocol standard Affymetrix procedures
Description 8 day old wild-type WS-O seedlings 4 hour Dexamethasone induction
Data processing MAS 5.0
 
Submission date Dec 31, 2005
Last update date Aug 28, 2018
Contact name Siobhan A Braybrook
E-mail(s) [email protected]
Organization name University of California, Davis
Department Plant Biology
Lab Harada Lab
Street address 1 Shields Ave
City Davis
State/province CA
ZIP/Postal code 95616
Country USA
 
Platform ID GPL198
Series (1)
GSE3959 RNA changes induced by LEAFY COTYLEDON2 activity in Arabidopsis seedlings
Relations
Reanalyzed by GSE119083

Data table header descriptions
ID_REF Affymetrix probe ID
VALUE This is the final calculated measurement for each probe set identifier that has been made comparable across all samples and rows
ABS_CALL A qualitative measurement indicating if the probe set is detected(Present ; P), not detected (Absent; A), or marginally detected(Marginal; M)
DETECTION P-VALUE A p-value indicating the significance of the Detection call

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-BioB-5_at 661.4 P 0.000225
AFFX-BioB-M_at 1269.6 P 0.000052
AFFX-BioB-3_at 1084.8 P 0.000044
AFFX-BioC-5_at 1515.9 P 0.000052
AFFX-BioC-3_at 1167.5 P 0.000044
AFFX-BioDn-5_at 2209.2 P 0.000044
AFFX-BioDn-3_at 8127.2 P 0.000044
AFFX-CreX-5_at 17506 P 0.000044
AFFX-CreX-3_at 22269.4 P 0.000044
AFFX-DapX-5_at 22.4 A 0.39692
AFFX-DapX-M_at 14.1 A 0.772364
AFFX-DapX-3_at 3.4 A 0.993129
AFFX-LysX-5_at 5.5 A 0.5
AFFX-LysX-M_at 9.9 A 0.883887
AFFX-LysX-3_at 22.2 A 0.544587
AFFX-PheX-5_at 3.8 A 0.966323
AFFX-PheX-M_at 20.2 A 0.814869
AFFX-PheX-3_at 12.5 A 0.772364
AFFX-ThrX-5_at 20.8 A 0.60308
AFFX-ThrX-M_at 29 A 0.659339

Total number of rows: 22810

Table truncated, full table size 588 Kbytes.




Supplementary file Size Download File type/resource
GSM90299.CEL.gz 3.3 Mb (ftp)(http) CEL
GSM90299.EXP.gz 480 b (ftp)(http) EXP

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