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Sample GSM908 Query DataSets for GSM908
Status Public on Feb 12, 2002
Title Hypo-osmotic shock - 5 min
Sample type RNA
 
Channel 1
Source name time = 0 (in 1M sorbitol)
Organism Saccharomyces cerevisiae
Extracted molecule total RNA
 
Channel 2
Source name time = 5 min after shift to YPD
Organism Saccharomyces cerevisiae
Extracted molecule total RNA
 
 
Description cells adapted to growht in YPD + 1M sorbitol - shifted to YPD - 5 min
ScanAlyze version 2.44 scanning software was used.
Keywords = starvation
Keywords = YPD-stationary-phase
Lot batch = y16-103
 
Submission date Feb 08, 2002
Last update date Nov 21, 2005
Organization Stanford Microarray Database (SMD)
E-mail(s) [email protected]
Phone 650-498-6012
URL http://genome-www5.stanford.edu/
Department Stanford University, School of Medicine
Street address 300 Pasteur Drive
City Stanford
State/province CA
ZIP/Postal code 94305
Country USA
 
Platform ID GPL56
Series (1)
GSE18 Yeast Stress Response

Data table header descriptions
ID_REF reference identifier
CH1B_MEAN mean of channel 1 background pixels
CH1B_MEDIAN median of channel 1 background pixels
CH1D_MEAN difference between CH1I_MEAN and CH1B_MEAN
CH2I_MEAN mean of channel 2 signal pixels
CH2D_MEAN difference of CH2I_MEAN and CH2B_MEAN
CH2B_MEAN mean of channel 2 background pixels
CH2B_MEDIAN median of channel 2 background pixels
CH2BN_MEDIAN normalized CH2B_MEDIAN
CH2DN_MEAN normalized CH2D_MEAN
CH2IN_MEAN normalized CH2I_MEAN
CORR simple correlation coefficient of channel 1 and channel 2 pixels
FLAG user defined flag (default=0)
VALUE same as UNF_VALUE but with flagged values removed
PIX_RAT2_MEDIAN
PERGTBCH1I_1SD standard deviation of fraction of pixels greater than CH1B_MEAN
PERGTBCH2I_1SD standard deviation of fraction of pixels greater than CH2B_MEAN
RAT1_MEAN ratio of CH1D_MEAN to CH2D_MEAN
RAT1N_MEAN ratio of CH1DN_MEAN to CH2DN_MEAN
RAT2_MEAN arithmetic mean of ratios of CH2D_MEAN to CH1D_MEAN
RAT2N_MEAN arithmetic mean of ratios of CH2DN_MEAN to CH1DN_MEAN
REGR slope of the simple regression line of channel 2 to channel 1 pixels
TOT_BPIX total number of background pixels
TOT_SPIX total number of signal (spot) pixels
TOP vertical, short-axis spot ellipse minimum pixel coordinate
BOT vertical, short-axis spot ellipse maximum pixel coordinate
LEFT horizontal, long-axis spot ellipse minimum pixel coordinate
RIGHT horizontal, long-axis spot ellipse maximum pixel coordinate
UNF_VALUE aka LOG_RAT2N_MEAN, or log2 of ratio of CH2DN_MEAN and CH1DN_MEAN

Data table
ID_REF CH1B_MEAN CH1B_MEDIAN CH1D_MEAN CH2I_MEAN CH2D_MEAN CH2B_MEAN CH2B_MEDIAN CH2BN_MEDIAN CH2DN_MEAN CH2IN_MEAN CORR FLAG VALUE PIX_RAT2_MEDIAN PERGTBCH1I_1SD PERGTBCH2I_1SD RAT1_MEAN RAT1N_MEAN RAT2_MEAN RAT2N_MEAN REGR TOT_BPIX TOT_SPIX TOP BOT LEFT RIGHT UNF_VALUE
1 655 601 703 1420 617 846 803 863 663 1526 .734 0 -.085 .909 53 49 1.139 1.06 .878 .943 .631 1119 177 60 75 153 168 -.085
2 645 589 4043 5411 4620 827 791 850 4968 5818 .879 0 .297 1.221 63 62 .875 .814 1.143 1.229 .959 883 177 60 75 170 185 .297
3 626 567 564 1180 438 789 742 797 471 1268 .748 0 -.26 .8 46 34 1.288 1.197 .777 .835 .604 896 177 60 75 187 202 -.26
4 607 558 422 1042 340 746 702 754 366 1120 .675 0 -.205 .857 47 32 1.241 1.153 .806 .867 .606 896 177 60 75 205 220 -.205
5 603 559 339 1007 328 724 679 730 352 1082 .433 0 .054 .775 42 37 1.034 .963 .968 1.038 .537 896 177 60 75 222 237 .054
6 567 532 898 1789 1140 679 649 697 1226 1923 .829 0 .449 1.229 51 52 .788 .732 1.269 1.365 1.062 896 177 60 75 240 255 .449
7 537 508 341 978 386 619 592 636 415 1051 .761 0 .283 1.254 40 39 .883 .822 1.132 1.217 .919 878 177 60 75 257 272 .283
8 480 457 517 1016 505 531 511 549 543 1092 .867 0 .071 .974 49 48 1.024 .952 .977 1.05 .852 865 177 60 75 275 290 .071
9 439 419 127 631 179 470 452 486 192 678 .469 0 .596 1.252 19 25 .709 .661 1.409 1.512 .544 886 177 60 75 292 307 .596
10 426 410 348 738 310 445 428 460 333 793 .661 0 -.064 .846 43 42 1.123 1.045 .891 .957 .604 919 177 60 75 310 325 -.064
11 408 400 2018 2993 2581 420 412 443 2775 3218 .867 0 .46 1.273 52 58 .782 .727 1.279 1.375 1.034 928 177 60 75 327 342 .46
12 398 392 753 1094 688 411 406 436 740 1176 .865 0 -.025 .847 49 51 1.094 1.018 .914 .983 .758 928 177 60 75 345 360 -.025
13 404 387 1423 2123 1722 416 401 431 1851 2282 .8 0 .379 1.347 50 55 .826 .769 1.21 1.301 .877 928 177 60 75 362 377 .379
14 410 391 617 971 570 422 401 431 613 1044 .783 0 -.009 .89 48 49 1.082 1.007 .924 .994 .713 928 177 60 75 380 395 -.009
15 518 401 798 1378 955 580 423 454 1027 1481 .312 0 .364 1.1 48 51 .836 .777 1.197 1.287 .346 928 177 60 75 397 412 .364
16 570 428 488 949 470 659 479 515 505 1020 .183 0 .049 1.035 40 39 1.038 .966 .963 1.035 .201 910 177 60 75 415 430 .049
17 505 450 655 1127 599 583 528 567 644 1211 .699 0 -.024 1.042 54 53 1.093 1.017 .915 .983 .645 890 177 60 75 432 447 -.024
18 472 423 721 883 403 534 480 516 433 949 .699 0 -.736 .591 55 52 1.789 1.665 .559 .601 .425 911 177 60 75 450 465 -.736
19 414 393 245 670 260 435 410 440 280 720 .662 0 .193 1.314 40 43 .942 .875 1.061 1.143 .664 928 177 60 75 467 482 .193
20 382 374 291 624 263 374 361 388 282 670 .741 0 -.045 .893 40 42 1.106 1.032 .904 .969 .676 896 177 61 76 485 500 -.045

Total number of rows: 8448

Table truncated, full table size 1023 Kbytes.




Supplementary data files not provided
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