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Sample GSM910 Query DataSets for GSM910
Status Public on Feb 12, 2002
Title Elutriation2:Sample2:Time1.0hrs
Sample type RNA
 
Channel 1
Source name Ref Pool
Organism Saccharomyces cerevisiae
Extracted molecule total RNA
 
Channel 2
Source name 2.2.3
Organism Saccharomyces cerevisiae
Extracted molecule total RNA
 
 
Description ScanAlyze version 2.44 scanning software was used.
Keywords = Cell-cycle
Keywords = Elutriation
Lot batch = y744n60
 
Submission date Feb 08, 2002
Last update date Nov 21, 2005
Organization Stanford Microarray Database (SMD)
E-mail(s) [email protected]
Phone 650-498-6012
URL http://genome-www5.stanford.edu/
Department Stanford University, School of Medicine
Street address 300 Pasteur Drive
City Stanford
State/province CA
ZIP/Postal code 94305
Country USA
 
Platform ID GPL59
Series (1)
GSE24 Elutriation time course

Data table header descriptions
ID_REF reference identifier
CH1B_MEAN mean of channel 1 background pixels
CH1B_MEDIAN median of channel 1 background pixels
CH1D_MEAN difference between CH1I_MEAN and CH1B_MEAN
CH2I_MEAN mean of channel 2 signal pixels
CH2D_MEAN difference of CH2I_MEAN and CH2B_MEAN
CH2B_MEAN mean of channel 2 background pixels
CH2B_MEDIAN median of channel 2 background pixels
CH2BN_MEDIAN normalized CH2B_MEDIAN
CH2DN_MEAN normalized CH2D_MEAN
CH2IN_MEAN normalized CH2I_MEAN
CORR simple correlation coefficient of channel 1 and channel 2 pixels
FLAG user defined flag (default=0)
VALUE same as UNF_VALUE but with flagged values removed
PIX_RAT2_MEDIAN
PERGTBCH1I_1SD standard deviation of fraction of pixels greater than CH1B_MEAN
PERGTBCH2I_1SD standard deviation of fraction of pixels greater than CH2B_MEAN
RAT1_MEAN ratio of CH1D_MEAN to CH2D_MEAN
RAT1N_MEAN ratio of CH1DN_MEAN to CH2DN_MEAN
RAT2_MEAN arithmetic mean of ratios of CH2D_MEAN to CH1D_MEAN
RAT2N_MEAN arithmetic mean of ratios of CH2DN_MEAN to CH1DN_MEAN
REGR slope of the simple regression line of channel 2 to channel 1 pixels
TOT_BPIX total number of background pixels
TOT_SPIX total number of signal (spot) pixels
TOP vertical, short-axis spot ellipse minimum pixel coordinate
BOT vertical, short-axis spot ellipse maximum pixel coordinate
LEFT horizontal, long-axis spot ellipse minimum pixel coordinate
RIGHT horizontal, long-axis spot ellipse maximum pixel coordinate
UNF_VALUE aka LOG_RAT2N_MEAN, or log2 of ratio of CH2DN_MEAN and CH1DN_MEAN

Data table
ID_REF CH1B_MEAN CH1B_MEDIAN CH1D_MEAN CH2I_MEAN CH2D_MEAN CH2B_MEAN CH2B_MEDIAN CH2BN_MEDIAN CH2DN_MEAN CH2IN_MEAN CORR FLAG VALUE PIX_RAT2_MEDIAN PERGTBCH1I_1SD PERGTBCH2I_1SD RAT1_MEAN RAT1N_MEAN RAT2_MEAN RAT2N_MEAN REGR TOT_BPIX TOT_SPIX TOP BOT LEFT RIGHT UNF_VALUE
1 409 408 574 903 583 330 320 380 695 1075 .882 0 .276 .875 18 20 .985 .826 1.016 1.211 .92 1048 80 13 23 57 67 .276
2 408 408 1522 1943 1623 335 320 380 1933 2313 .865 0 .345 .86 37 37 .938 .787 1.066 1.27 .969 838 80 13 23 67 77 .345
3 407 400 1011 1182 862 333 320 380 1027 1407 .895 0 .023 .964 30 31 1.173 .984 .853 1.016 .797 733 80 13 23 77 87 .023
4 406 400 238 506 186 330 320 380 222 602 .736 0 -.1 .728 27 25 1.28 1.072 .782 .933 .661 733 80 13 23 87 97 -.1
5 427 400 612 1707 1387 387 320 380 1652 2032 .839 0 1.433 1.7 31 45 .441 .37 2.266 2.699 2.039 733 80 13 23 97 107 1.433
6 427 400 293 549 229 386 320 380 273 653 .687 0 -.102 .833 26 26 1.279 1.073 .782 .932 .984 733 80 13 23 107 117 -.102
7 425 400 553 728 408 378 320 380 486 866 .694 0 -.186 .732 40 38 1.355 1.138 .738 .879 .545 733 80 13 23 117 127 -.186
8 426 400 587 902 582 375 320 380 693 1073 .793 0 .239 .886 61 58 1.009 .847 .991 1.181 1.091 733 80 13 23 127 137 .239
9 403 400 289 532 220 318 312 371 262 633 .812 0 -.142 .907 25 27 1.314 1.103 .761 .907 .675 733 80 13 23 137 147 -.142
10 406 408 157 438 126 316 312 371 150 521 .665 0 -.066 1 17 17 1.246 1.047 .803 .955 .587 733 80 13 23 147 157 -.066
11 406 408 321 611 299 314 312 371 356 727 .795 0 .149 1 21 25 1.074 .902 .931 1.109 .757 733 80 13 23 157 167 .149
12 407 408 366 615 303 312 312 371 361 732 .855 0 -.02 .904 25 28 1.208 1.014 .828 .986 .767 733 80 13 23 167 177 -.02
13 409 408 56 351 47 309 304 361 56 417 .778 0 0 .667 6 5 1.191 1 .839 1 .564 733 80 13 23 177 187 0
14 442 408 124 387 83 333 304 361 99 460 .818 0 -.325 1 10 10 1.494 1.253 .669 .798 .651 733 80 13 23 187 197 -.325
15 453 408 979 1223 919 337 304 361 1094 1455 .911 -100 1 22 26 1.065 .895 .939 1.117 .87 733 80 13 23 197 207 .16
16 455 408 609 887 583 338 304 361 694 1055 .893 -100 1.15 17 21 1.045 .878 .957 1.14 .908 733 80 13 23 207 217 .188
17 454 408 249 498 194 339 304 361 231 592 .842 0 -.108 .756 27 23 1.284 1.078 .779 .928 .678 733 80 13 23 217 227 -.108
18 427 408 62 316 12 316 304 361 15 376 .466 0 -2.047 .429 7 2 5.167 4.133 .194 .242 .208 733 80 13 23 227 237 -2.047
19 419 408 27474 496 192 312 304 361 229 590 .81 0 -6.907 .008 80 37 143.094 119.974 .007 .008 .007 733 80 13 23 237 247 -6.907
20 418 408 973 2171 1867 312 304 361 2223 2584 .858 0 1.192 1.5 58 66 .521 .438 1.919 2.285 1.73 733 80 13 23 247 257 1.192

Total number of rows: 7680

Table truncated, full table size 926 Kbytes.




Supplementary data files not provided
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