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Sample GSM914 Query DataSets for GSM914
Status Public on Feb 12, 2002
Title Hypo-osmotic shock -30 minutes
Sample type RNA
 
Channel 1
Source name time = 0 in 1M sorbitol
Organism Saccharomyces cerevisiae
Extracted molecule total RNA
 
Channel 2
Source name time = 30 minutes after shift to YPD
Organism Saccharomyces cerevisiae
Extracted molecule total RNA
 
 
Description Hypo-osmotic shock
ScanAlyze version 2.44 scanning software was used.
Keywords = starvation
Keywords = YPD-stationary-phase
Lot batch = y16-105
 
Submission date Feb 08, 2002
Last update date Nov 21, 2005
Organization Stanford Microarray Database (SMD)
E-mail(s) [email protected]
Phone 650-498-6012
URL http://genome-www5.stanford.edu/
Department Stanford University, School of Medicine
Street address 300 Pasteur Drive
City Stanford
State/province CA
ZIP/Postal code 94305
Country USA
 
Platform ID GPL56
Series (1)
GSE18 Yeast Stress Response

Data table header descriptions
ID_REF reference identifier
CH1B_MEAN mean of channel 1 background pixels
CH1B_MEDIAN median of channel 1 background pixels
CH1D_MEAN difference between CH1I_MEAN and CH1B_MEAN
CH2I_MEAN mean of channel 2 signal pixels
CH2D_MEAN difference of CH2I_MEAN and CH2B_MEAN
CH2B_MEAN mean of channel 2 background pixels
CH2B_MEDIAN median of channel 2 background pixels
CH2BN_MEDIAN normalized CH2B_MEDIAN
CH2DN_MEAN normalized CH2D_MEAN
CH2IN_MEAN normalized CH2I_MEAN
CORR simple correlation coefficient of channel 1 and channel 2 pixels
FLAG user defined flag (default=0)
VALUE same as UNF_VALUE but with flagged values removed
PIX_RAT2_MEDIAN
PERGTBCH1I_1SD standard deviation of fraction of pixels greater than CH1B_MEAN
PERGTBCH2I_1SD standard deviation of fraction of pixels greater than CH2B_MEAN
RAT1_MEAN ratio of CH1D_MEAN to CH2D_MEAN
RAT1N_MEAN ratio of CH1DN_MEAN to CH2DN_MEAN
RAT2_MEAN arithmetic mean of ratios of CH2D_MEAN to CH1D_MEAN
RAT2N_MEAN arithmetic mean of ratios of CH2DN_MEAN to CH1DN_MEAN
REGR slope of the simple regression line of channel 2 to channel 1 pixels
TOT_BPIX total number of background pixels
TOT_SPIX total number of signal (spot) pixels
TOP vertical, short-axis spot ellipse minimum pixel coordinate
BOT vertical, short-axis spot ellipse maximum pixel coordinate
LEFT horizontal, long-axis spot ellipse minimum pixel coordinate
RIGHT horizontal, long-axis spot ellipse maximum pixel coordinate
UNF_VALUE aka LOG_RAT2N_MEAN, or log2 of ratio of CH2DN_MEAN and CH1DN_MEAN

Data table
ID_REF CH1B_MEAN CH1B_MEDIAN CH1D_MEAN CH2I_MEAN CH2D_MEAN CH2B_MEAN CH2B_MEDIAN CH2BN_MEDIAN CH2DN_MEAN CH2IN_MEAN CORR FLAG VALUE PIX_RAT2_MEDIAN PERGTBCH1I_1SD PERGTBCH2I_1SD RAT1_MEAN RAT1N_MEAN RAT2_MEAN RAT2N_MEAN REGR TOT_BPIX TOT_SPIX TOP BOT LEFT RIGHT UNF_VALUE
1 780 644 815 2253 922 1455 1331 1006 697 1703 .589 0 -.226 1.137 62 52 .884 1.17 1.131 .855 .709 1119 177 67 82 101 116 -.226
2 787 648 4292 7608 6265 1480 1343 1015 4735 5750 .89 0 .142 1.503 58 62 .685 .907 1.46 1.103 1.205 915 177 66 81 118 133 .142
3 810 680 678 2153 795 1484 1358 1026 601 1627 .298 0 -.174 1.118 48 40 .853 1.129 1.173 .886 .32 928 177 66 81 135 150 -.174
4 814 680 442 1671 323 1525 1348 1019 244 1263 .25 -100 .858 40 28 1.368 1.811 .731 .552 .302 928 177 66 81 153 168 -.857
5 795 650 398 1504 190 1519 1314 993 144 1137 -100 .652 46 18 2.095 2.772 .477 .361 928 177 66 81 170 185 -1.471
6 802 639 1282 2266 966 1503 1300 982 730 1712 .679 -100 .777 60 32 1.327 1.756 .754 .569 .67 928 177 66 81 188 203 -.812
7 846 656 379 1853 517 1531 1336 1010 391 1400 .298 -100 1.018 45 29 .733 .97 1.364 1.031 .636 911 177 66 81 205 220 .044
8 861 645 625 1945 552 1585 1393 1053 417 1470 .296 -100 1.002 54 41 1.132 1.498 .883 .667 .365 899 177 66 81 223 238 -.583
9 867 664 285 1575 202 1590 1373 1038 153 1190 .004 -100 1.592 29 22 1.411 1.867 .709 .536 .006 910 177 66 81 240 255 -.901
10 891 650 193 1431 89 1563 1342 1014 67 1081 -100 .909 26 12 2.169 2.87 .461 .348 928 177 66 81 258 273 -1.521
11 887 652 2442 6030 4670 1565 1360 1028 3529 4557 .869 0 .531 1.906 67 71 .523 .692 1.912 1.445 1.536 928 177 66 81 275 290 .531
12 920 725 920 2544 1145 1608 1399 1057 865 1923 .521 0 -.088 1.194 61 57 .803 1.063 1.245 .941 .651 928 177 66 81 293 308 -.088
13 900 714 1610 4306 2901 1615 1405 1062 2192 3254 .817 0 .445 1.885 61 58 .555 .734 1.802 1.362 1.377 928 177 66 81 310 325 .445
14 894 715 814 2164 720 1674 1444 1091 544 1635 .364 0 -.581 .815 53 40 1.131 1.496 .885 .668 .418 928 177 66 81 328 343 -.581
15 894 728 946 3752 2310 1685 1442 1090 1746 2835 .768 0 .884 2.501 57 58 .41 .542 2.442 1.845 1.723 928 177 66 81 345 360 .884
16 886 721 712 1947 469 1694 1478 1117 354 1471 .491 0 -1.006 .856 52 30 1.518 2.009 .659 .498 .575 910 177 66 81 363 378 -1.006
17 903 726 836 2572 1088 1699 1484 1121 822 1944 .473 0 -.024 1.174 59 54 .768 1.017 1.301 .984 .679 890 177 66 81 380 395 -.024
18 900 712 1208 2644 1188 1715 1456 1100 898 1998 .455 0 -.428 .9 66 64 1.017 1.346 .983 .743 .524 911 177 66 81 398 413 -.428
19 915 736 387 2048 600 1714 1448 1094 453 1548 .067 0 .229 2.182 49 46 .645 .853 1.55 1.172 .127 918 177 66 81 415 430 .229
20 931 746 189 1749 268 1690 1481 1119 203 1322 -100 .908 24 13 .705 .933 1.418 1.072 905 177 66 81 433 448 .1

Total number of rows: 8448

Table truncated, full table size 1037 Kbytes.




Supplementary data files not provided
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