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Status
Public on Nov 03, 2006
Title
90caf1kg
Sample type
RNA
Channel 1 Source name
90caf1_test
Organism
Saccharomyces cerevisiae Characteristics
'drug: caffeine', 'time: 90 min', 'concentration: 2mM'
Extracted molecule
total RNA
Label
Cy5
Channel 2 Source name
90caf1_ctrl
Organism
Saccharomyces cerevisiae Characteristics
'drug: caffeine', 'time: 90 min', 'concentration: 0mM'
Extracted molecule
total RNA
Label
Cy3
Description
Yeast treated at caffeine (2mM) vs non treated. 90 min from the start of treatment.
Data processing
VALUE=log(CH1/CH2)-K, where CH1=max(10,CH1_SIG_MEDIAN-CH1_BKD_MEDIAN), same for CH2. K - is a normalization coefficient K=mean_over_all_spots(log(CH1/CH2))
Submission date
Jan 10, 2006
Last update date
Nov 03, 2006
Contact name
Serguei Sokol
E-mail(s)
[email protected] URL
http://biopuce.insa-toulouse.fr Organization name
INSA
Department
Lab. Biotech. and Bioprocess
Lab
Biopuces
Street address
135 av de Rangueil
City
Toulouse
ZIP/Postal code
31077
Country
France
Platform ID
GPL3250 Series (1)
GSE4049 Time-course studies of three cell wall interfering drugs on gene expression in yeast
Data table header descriptions ID_REF VALUE normalized by total mean log ratio (test over control)
CH1_SIG_MEDIAN median in red channel
CH1_BKD_MEAN background in red channel
CH2_SIG_MEDIAN median in green channel
CH2_BKD_MEAN background in green channel
Data table ID_REF VALUE CH1_SIG_MEDIAN CH1_BKD_MEAN CH2_SIG_MEDIAN CH2_BKD_MEAN 01P09.2
-0.248172
365
56
303
61
01P09.1
-0.0344663
286
52
216
68
01P01.2
-0.637757
111
47
130
56
01P01.1
-0.661198
97
48
114
56
01L17.2
-0.0963267
211
49
162
53
01L17.1
0.16169
276
49
173
55
01L09.2
-0.261834
8045
52
6404
58
01L09.1
-0.215389
4539
53
3466
66
01L01.2
0.149279
69
50
65
56
01L01.1
-0.492575
59
50
63
57
01H17.2
0.44798
195
49
112
55
01H17.1
0.0670407
183
50
131
55
01H09.2
0.37962
661
51
312
57
01H09.1
0.43726
721
52
320
56
01H01.2
0.263599
624
51
324
55
01H01.1
0.427789
545
53
252
56
01D17.2
-0.213815
10690
52
8107
57
01D17.1
-0.250347
7049
53
5549
58
01D09.2
-0.119777
2164
56
1512
60
01D09.1
-0.141642
1865
54
1332
57
15488 487 Kbytes .Supplementary data files not provided
