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Status
Public on Nov 03, 2006
Title
15caf1kg
Sample type
RNA
Channel 1 Source name
15caf1_test
Organism
Saccharomyces cerevisiae Characteristics
'drug: caffeine', 'time: 15 min', 'concentration: 2mM'
Extracted molecule
total RNA
Label
Cy5
Channel 2 Source name
15caf1_ctrl
Organism
Saccharomyces cerevisiae Characteristics
'drug: caffeine', 'time: 15 min', 'concentration: 0mM'
Extracted molecule
total RNA
Label
Cy3
Description
Yeast treated at caffeine (2mM) vs non treated. 15 min from the start of treatment.
Data processing
VALUE=log(CH1/CH2)-K, where CH1=max(10,CH1_SIG_MEDIAN-CH1_BKD_MEDIAN), same for CH2. K - is a normalization coefficient K=mean_over_all_spots(log(CH1/CH2))
Submission date
Jan 10, 2006
Last update date
Nov 03, 2006
Contact name
Serguei Sokol
E-mail(s)
[email protected] URL
http://biopuce.insa-toulouse.fr Organization name
INSA
Department
Lab. Biotech. and Bioprocess
Lab
Biopuces
Street address
135 av de Rangueil
City
Toulouse
ZIP/Postal code
31077
Country
France
Platform ID
GPL3250 Series (1)
GSE4049 Time-course studies of three cell wall interfering drugs on gene expression in yeast
Data table header descriptions ID_REF VALUE normalized by total mean log ratio (test over control)
CH1_SIG_MEDIAN median in red channel
CH1_BKD_MEAN background in red channel
CH2_SIG_MEDIAN median in green channel
CH2_BKD_MEAN background in green channel
Data table ID_REF VALUE CH1_SIG_MEDIAN CH1_BKD_MEAN CH2_SIG_MEDIAN CH2_BKD_MEAN 01P09.2
-0.0642552
303
59
169
50
01P09.1
0.0275296
283
56
149
48
01P01.2
0.316312
140
41
74
41
01P01.1
0.316312
140
41
74
41
01L17.2
0.236589
282
41
128
41
01L17.1
0.20283
273
40
128
41
01L09.2
0.228585
9819
47
3599
43
01L09.1
0.206852
7566
45
2840
43
01L01.2
-0.248217
70
41
60
43
01L01.1
-0.445828
57
43
53
45
01H17.2
-0.0330633
155
45
102
50
01H17.1
-0.169195
167
47
112
47
01H09.2
-0.295285
542
44
355
49
01H09.1
-0.396066
459
47
332
52
01H01.2
0.209498
600
50
253
49
01H01.1
0.16177
412
47
187
45
01D17.2
0.348869
11651
69
3790
53
01D17.1
0.27062
9636
75
3392
56
01D09.2
0.0824034
2170
45
941
46
01D09.1
0.172276
3894
47
1527
46
15488 478 Kbytes .Supplementary data files not provided
