GEO help: Mouse over screen elements for information.
Status
Public on Nov 03, 2006
Title
cr5_2_kr
Sample type
RNA
Channel 1 Source name
cr5_2_ctrl2
Organism
Saccharomyces cerevisiae Characteristics
'drug: congo red', 'time: 5 min', 'concentration: 0mg/ml'
Extracted molecule
total RNA
Label
Cy5
Channel 2 Source name
cr5_2_test2
Organism
Saccharomyces cerevisiae Characteristics
'drug: congo red', 'time: 5 min', 'concentration: 0.1mg/ml'
Extracted molecule
total RNA
Label
Cy3
Description
Yeast treated at congo red (0.1mg/ml) vs non treated. 5 min from the start of treatment.
Data processing
VALUE=log(CH2/CH1)-K, where CH1=max(10,CH1_SIG_MEDIAN-CH1_BKD_MEDIAN), same for CH2. K - is a normalization coefficient K=mean_over_all_spots(log(CH2/CH1))
Submission date
Jan 11, 2006
Last update date
Nov 03, 2006
Contact name
Serguei Sokol
E-mail(s)
[email protected] URL
http://biopuce.insa-toulouse.fr Organization name
INSA
Department
Lab. Biotech. and Bioprocess
Lab
Biopuces
Street address
135 av de Rangueil
City
Toulouse
ZIP/Postal code
31077
Country
France
Platform ID
GPL3250 Series (1)
GSE4049 Time-course studies of three cell wall interfering drugs on gene expression in yeast
Data table header descriptions ID_REF VALUE normalized by total mean log ratio (test over control)
CH1_SIG_MEDIAN median in red channel
CH1_BKD_MEAN background in red channel
CH2_SIG_MEDIAN median in green channel
CH2_BKD_MEAN background in green channel
Data table ID_REF VALUE CH1_SIG_MEDIAN CH1_BKD_MEAN CH2_SIG_MEDIAN CH2_BKD_MEAN 01P09.2
-0.159945
312
65
243
85
01P09.1
-0.168627
188
65
162
84
01P01.2
-0.0808761
119
67
118
82
01P01.1
1.45
130
176
121
89
01L17.2
1.87608
166
161
131
82
01L17.1
-0.0683546
162
65
142
74
01L09.2
0.0182971
3277
67
2529
75
01L09.1
-0.095148
1941
67
1357
78
01L01.2
0.206806
79
66
87
75
01L01.1
0.286849
86
72
94
80
01H17.2
-0.775396
153
72
108
80
01H17.1
0.148012
121
67
120
73
01H09.2
0.0432266
332
73
274
71
01H09.1
-0.123838
352
64
259
68
01H01.2
-0.0564032
357
61
278
68
01H01.1
0.0157708
283
64
238
71
01D17.2
-0.0183392
5963
66
4418
72
01D17.1
0.112467
5184
66
4371
72
01D09.2
0.0492845
746
65
608
71
01D09.1
0.013428
737
64
581
69
15488 489 Kbytes .Supplementary data files not provided
