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Sample GSM919 Query DataSets for GSM919
Status Public on Feb 12, 2002
Title 29C to 33C - 15 min
Sample type RNA
 
Channel 1
Source name time = 0 at 29C
Organism Saccharomyces cerevisiae
Extracted molecule total RNA
 
Channel 2
Source name time = 15 mintues after shift to 33C
Organism Saccharomyces cerevisiae
Extracted molecule total RNA
 
 
Description temperature shfit
ScanAlyze version 2.44 scanning software was used.
Keywords = starvation
Keywords = YPD-stationary-phase
Lot batch = y16-110
 
Submission date Feb 08, 2002
Last update date Nov 21, 2005
Organization Stanford Microarray Database (SMD)
E-mail(s) [email protected]
Phone 650-498-6012
URL http://genome-www5.stanford.edu/
Department Stanford University, School of Medicine
Street address 300 Pasteur Drive
City Stanford
State/province CA
ZIP/Postal code 94305
Country USA
 
Platform ID GPL56
Series (1)
GSE18 Yeast Stress Response

Data table header descriptions
ID_REF reference identifier
CH1B_MEAN mean of channel 1 background pixels
CH1B_MEDIAN median of channel 1 background pixels
CH1D_MEAN difference between CH1I_MEAN and CH1B_MEAN
CH2I_MEAN mean of channel 2 signal pixels
CH2D_MEAN difference of CH2I_MEAN and CH2B_MEAN
CH2B_MEAN mean of channel 2 background pixels
CH2B_MEDIAN median of channel 2 background pixels
CH2BN_MEDIAN normalized CH2B_MEDIAN
CH2DN_MEAN normalized CH2D_MEAN
CH2IN_MEAN normalized CH2I_MEAN
CORR simple correlation coefficient of channel 1 and channel 2 pixels
FLAG user defined flag (default=0)
VALUE same as UNF_VALUE but with flagged values removed
PIX_RAT2_MEDIAN
PERGTBCH1I_1SD standard deviation of fraction of pixels greater than CH1B_MEAN
PERGTBCH2I_1SD standard deviation of fraction of pixels greater than CH2B_MEAN
RAT1_MEAN ratio of CH1D_MEAN to CH2D_MEAN
RAT1N_MEAN ratio of CH1DN_MEAN to CH2DN_MEAN
RAT2_MEAN arithmetic mean of ratios of CH2D_MEAN to CH1D_MEAN
RAT2N_MEAN arithmetic mean of ratios of CH2DN_MEAN to CH1DN_MEAN
REGR slope of the simple regression line of channel 2 to channel 1 pixels
TOT_BPIX total number of background pixels
TOT_SPIX total number of signal (spot) pixels
TOP vertical, short-axis spot ellipse minimum pixel coordinate
BOT vertical, short-axis spot ellipse maximum pixel coordinate
LEFT horizontal, long-axis spot ellipse minimum pixel coordinate
RIGHT horizontal, long-axis spot ellipse maximum pixel coordinate
UNF_VALUE aka LOG_RAT2N_MEAN, or log2 of ratio of CH2DN_MEAN and CH1DN_MEAN

Data table
ID_REF CH1B_MEAN CH1B_MEDIAN CH1D_MEAN CH2I_MEAN CH2D_MEAN CH2B_MEAN CH2B_MEDIAN CH2BN_MEDIAN CH2DN_MEAN CH2IN_MEAN CORR FLAG VALUE PIX_RAT2_MEDIAN PERGTBCH1I_1SD PERGTBCH2I_1SD RAT1_MEAN RAT1N_MEAN RAT2_MEAN RAT2N_MEAN REGR TOT_BPIX TOT_SPIX TOP BOT LEFT RIGHT UNF_VALUE
1 396 387 629 1475 1128 360 347 265 862 1127 .87 0 .454 1.685 49 54 .558 .73 1.793 1.37 1.481 1119 177 74 89 92 107 .454
2 408 396 3846 3988 3627 377 361 276 2771 3047 .893 0 -.473 1.02 54 57 1.06 1.388 .943 .721 .804 893 177 74 89 109 124 -.473
3 402 391 531 921 562 379 359 274 429 704 .877 0 -.306 1.053 44 48 .945 1.237 1.058 .809 .862 918 177 74 89 126 141 -.306
4 393 384 284 793 440 372 353 270 336 606 .854 0 .243 1.483 38 46 .645 .845 1.549 1.184 1.209 975 177 74 89 144 159 .243
5 410 392 319 814 458 382 356 272 350 622 .727 0 .134 1.361 44 50 .697 .912 1.436 1.097 .937 925 177 75 90 163 178 .134
6 410 390 359 3682 3332 373 350 267 2546 2813 .739 0 2.826 7.849 40 60 .108 .141 9.281 7.092 5.172 889 177 75 90 181 196 2.826
7 407 391 213 729 375 381 354 270 287 557 .642 0 .428 2.056 29 42 .568 .743 1.761 1.345 .916 902 177 75 90 198 213 .428
8 404 388 557 957 600 381 357 273 458 731 .838 0 -.281 1.064 48 49 .928 1.215 1.077 .823 .887 902 177 75 90 216 231 -.281
9 394 385 75 500 150 381 350 267 115 382 .659 0 .612 1.92 11 25 .5 .654 2 1.528 1.268 880 177 76 91 233 248 .612
10 385 376 341 769 424 374 345 264 324 588 .82 0 -.074 1.32 44 49 .804 1.053 1.243 .95 1.014 911 177 76 91 251 266 -.074
11 379 371 1791 2343 2001 353 342 261 1529 1790 .923 0 -.228 1.099 52 55 .895 1.171 1.117 .854 1.015 908 177 76 91 268 283 -.228
12 385 374 641 1091 754 347 337 257 576 834 .886 0 -.154 1.119 47 53 .85 1.113 1.176 .899 .993 897 177 77 92 285 300 -.154
13 392 373 905 2947 2614 351 333 254 1997 2252 .842 0 1.142 2.553 47 57 .346 .453 2.888 2.207 2.164 900 177 77 92 303 318 1.142
14 380 368 490 1262 933 346 329 251 713 964 .854 0 .541 1.89 48 54 .525 .687 1.904 1.455 1.505 921 177 77 92 320 335 .541
15 375 367 780 906 579 337 327 250 442 692 .881 0 -.818 .688 47 49 1.347 1.763 .742 .567 .649 931 177 77 92 338 353 -.818
16 379 367 383 1140 814 337 326 249 622 871 .861 0 .699 1.837 41 49 .471 .616 2.125 1.624 1.73 877 177 78 93 355 370 .699
17 680 374 572 1069 738 569 331 253 564 817 .461 0 -.021 1.186 46 51 .775 1.014 1.29 .986 .398 897 177 78 93 373 388 -.021
18 773 382 639 948 606 703 342 261 463 724 .479 0 -.465 .883 54 55 1.054 1.38 .948 .725 .45 878 177 78 93 390 405 -.465
19 764 382 293 579 237 696 342 261 181 442 .471 0 -.694 .853 42 44 1.236 1.618 .809 .618 .442 897 177 78 93 406 421 -.694
20 377 373 268 720 382 349 338 258 292 550 .78 0 .123 1.308 41 48 .702 .918 1.425 1.089 1.055 896 177 79 94 424 439 .123

Total number of rows: 8448

Table truncated, full table size 1024 Kbytes.




Supplementary data files not provided
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