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Sample GSM922 Query DataSets for GSM922
Status Public on Feb 12, 2002
Title alpha factor release sample018
Sample type RNA
 
Channel 1
Source name asynchronous control (prep3)
Organism Saccharomyces cerevisiae
Extracted molecule total RNA
 
Channel 2
Source name 18
Organism Saccharomyces cerevisiae
Extracted molecule total RNA
 
 
Description ScanAlyze version 2.03 scanning software was used.
Keywords = Cell-cycle
Keywords = Alpha factor block-release
Lot batch = y744n102
 
Submission date Feb 08, 2002
Last update date Nov 21, 2005
Organization Stanford Microarray Database (SMD)
E-mail(s) [email protected]
Phone 650-498-6012
URL http://genome-www5.stanford.edu/
Department Stanford University, School of Medicine
Street address 300 Pasteur Drive
City Stanford
State/province CA
ZIP/Postal code 94305
Country USA
 
Platform ID GPL59
Series (1)
GSE22 Alpha-factor block-release

Data table header descriptions
ID_REF reference identifier
CH1B_MEAN mean of channel 1 background pixels
CH1B_MEDIAN median of channel 1 background pixels
CH1D_MEAN difference between CH1I_MEAN and CH1B_MEAN
CH2I_MEAN mean of channel 2 signal pixels
CH2D_MEAN difference of CH2I_MEAN and CH2B_MEAN
CH2B_MEAN mean of channel 2 background pixels
CH2B_MEDIAN median of channel 2 background pixels
CH2BN_MEDIAN normalized CH2B_MEDIAN
CH2DN_MEAN normalized CH2D_MEAN
CH2IN_MEAN normalized CH2I_MEAN
CORR simple correlation coefficient of channel 1 and channel 2 pixels
FLAG user defined flag (default=0)
VALUE same as UNF_VALUE but with flagged values removed
PIX_RAT2_MEDIAN
PERGTBCH1I_1SD standard deviation of fraction of pixels greater than CH1B_MEAN
PERGTBCH2I_1SD standard deviation of fraction of pixels greater than CH2B_MEAN
RAT1_MEAN ratio of CH1D_MEAN to CH2D_MEAN
RAT1N_MEAN ratio of CH1DN_MEAN to CH2DN_MEAN
RAT2_MEAN arithmetic mean of ratios of CH2D_MEAN to CH1D_MEAN
RAT2N_MEAN arithmetic mean of ratios of CH2DN_MEAN to CH1DN_MEAN
REGR slope of the simple regression line of channel 2 to channel 1 pixels
TOT_BPIX total number of background pixels
TOT_SPIX total number of signal (spot) pixels
TOP vertical, short-axis spot ellipse minimum pixel coordinate
BOT vertical, short-axis spot ellipse maximum pixel coordinate
LEFT horizontal, long-axis spot ellipse minimum pixel coordinate
RIGHT horizontal, long-axis spot ellipse maximum pixel coordinate
UNF_VALUE aka LOG_RAT2N_MEAN, or log2 of ratio of CH2DN_MEAN and CH1DN_MEAN

Data table
ID_REF CH1B_MEAN CH1B_MEDIAN CH1D_MEAN CH2I_MEAN CH2D_MEAN CH2B_MEAN CH2B_MEDIAN CH2BN_MEDIAN CH2DN_MEAN CH2IN_MEAN CORR FLAG VALUE PIX_RAT2_MEDIAN PERGTBCH1I_1SD PERGTBCH2I_1SD RAT1_MEAN RAT1N_MEAN RAT2_MEAN RAT2N_MEAN REGR TOT_BPIX TOT_SPIX TOP BOT LEFT RIGHT UNF_VALUE
1 282 280 190 432 160 270 272 344 203 547 .896 0 .095 .8 20 21 1.188 .936 .842 1.068 .833 1227 69 20 31 57 68 .095
2 283 280 327 603 331 270 272 344 419 763 .911 0 .358 1.083 31 33 .988 .78 1.012 1.281 .983 1050 69 20 31 67 78 .358
3 286 280 317 595 331 270 264 334 419 753 .861 0 .402 1 34 36 .958 .757 1.044 1.322 .891 950 69 20 31 77 88 .402
4 288 280 103 340 76 273 264 334 96 430 .846 0 -.102 1 17 18 1.355 1.073 .738 .932 .649 950 69 20 31 87 98 -.102
5 286 280 284 752 488 273 264 334 618 952 .901 0 1.122 1.444 27 36 .582 .46 1.718 2.176 1.496 950 69 20 31 97 108 1.122
6 285 280 86 316 52 274 264 334 66 400 .853 0 -.382 .591 17 17 1.654 1.303 .605 .767 .502 950 69 20 31 107 118 -.382
7 285 280 67 304 32 276 272 344 41 385 .845 0 -.709 .65 14 8 2.094 1.634 .478 .612 .538 950 69 20 31 117 128 -.709
8 281 280 473 562 290 270 272 344 367 711 .921 0 -.366 .599 65 59 1.631 1.289 .613 .776 .599 950 69 20 31 127 138 -.366
9 282 280 104 340 76 269 264 334 96 430 .862 0 -.115 .744 14 15 1.368 1.083 .731 .923 .575 950 69 20 31 137 148 -.115
10 283 280 55 309 37 269 272 344 47 391 .839 0 -.227 1 10 10 1.486 1.17 .673 .855 .681 950 69 20 31 147 158 -.227
11 282 280 100 343 79 267 264 334 100 434 .915 0 0 .897 14 15 1.266 1 .79 1 .689 950 69 20 31 157 168 0
12 287 280 149 404 140 274 264 334 177 511 .931 0 .248 1 30 26 1.064 .842 .94 1.188 .845 950 69 20 31 167 178 .248
13 287 280 229 412 140 275 272 344 178 522 .573 0 -.363 .667 10 10 1.636 1.287 .611 .777 .325 950 69 20 31 177 188 -.363
14 293 280 164 392 120 282 272 344 152 496 .721 0 -.11 .875 18 15 1.367 1.079 .732 .927 .467 950 69 20 31 187 198 -.11
15 299 280 196 464 192 289 272 344 243 587 .948 0 .31 .94 23 23 1.021 .807 .98 1.24 .973 950 69 20 31 197 208 .31
16 291 280 291 594 322 281 272 344 408 752 .875 0 .488 .8 17 17 .904 .713 1.107 1.402 .953 950 69 20 31 207 218 .488
17 373 280 134 389 117 280 272 344 148 492 .898 0 .143 .898 21 24 1.145 .905 .873 1.104 .714 950 69 20 31 217 228 .143
18 381 280 23 281 17 272 264 334 22 356 .637 0 -.064 1 5 1 1.353 1.045 .739 .957 .471 950 69 20 31 227 238 -.064
19 373 272 16777 353 89 265 264 334 113 447 0 0 -7.214 .005 86 24 188.506 148.469 .005 .007 0 950 69 20 31 237 248 -7.214
20 374 272 226 723 459 267 264 334 581 915 .732 0 1.362 1.8 43 62 .492 .389 2.031 2.571 1.799 950 69 20 31 247 258 1.362

Total number of rows: 7680

Table truncated, full table size 921 Kbytes.




Supplementary data files not provided
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