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Sample GSM926 Query DataSets for GSM926
Status Public on Feb 12, 2002
Title heat shock 33 to 37, 20 minutes
Sample type RNA
 
Channel 1
Source name 33 t0
Organism Saccharomyces cerevisiae
Extracted molecule total RNA
 
Channel 2
Source name 37 t20
Organism Saccharomyces cerevisiae
Extracted molecule total RNA
 
 
Description ScanAlyze version 2.24 scanning software was used.
Keywords = starvation
Keywords = YPD-stationary-phase
Lot batch = y11n117
 
Submission date Feb 08, 2002
Last update date Nov 21, 2005
Organization Stanford Microarray Database (SMD)
E-mail(s) [email protected]
Phone 650-498-6012
URL http://genome-www5.stanford.edu/
Department Stanford University, School of Medicine
Street address 300 Pasteur Drive
City Stanford
State/province CA
ZIP/Postal code 94305
Country USA
 
Platform ID GPL51
Series (1)
GSE18 Yeast Stress Response

Data table header descriptions
ID_REF reference identifier
CH1B_MEAN mean of channel 1 background pixels
CH1B_MEDIAN median of channel 1 background pixels
CH1D_MEAN difference between CH1I_MEAN and CH1B_MEAN
CH2I_MEAN mean of channel 2 signal pixels
CH2D_MEAN difference of CH2I_MEAN and CH2B_MEAN
CH2B_MEAN mean of channel 2 background pixels
CH2B_MEDIAN median of channel 2 background pixels
CH2BN_MEDIAN normalized CH2B_MEDIAN
CH2DN_MEAN normalized CH2D_MEAN
CH2IN_MEAN normalized CH2I_MEAN
CORR simple correlation coefficient of channel 1 and channel 2 pixels
FLAG user defined flag (default=0)
VALUE same as UNF_VALUE but with flagged values removed
PIX_RAT2_MEDIAN
PERGTBCH1I_1SD standard deviation of fraction of pixels greater than CH1B_MEAN
PERGTBCH2I_1SD standard deviation of fraction of pixels greater than CH2B_MEAN
RAT1_MEAN ratio of CH1D_MEAN to CH2D_MEAN
RAT1N_MEAN ratio of CH1DN_MEAN to CH2DN_MEAN
RAT2_MEAN arithmetic mean of ratios of CH2D_MEAN to CH1D_MEAN
RAT2N_MEAN arithmetic mean of ratios of CH2DN_MEAN to CH1DN_MEAN
REGR slope of the simple regression line of channel 2 to channel 1 pixels
TOT_BPIX total number of background pixels
TOT_SPIX total number of signal (spot) pixels
TOP vertical, short-axis spot ellipse minimum pixel coordinate
BOT vertical, short-axis spot ellipse maximum pixel coordinate
LEFT horizontal, long-axis spot ellipse minimum pixel coordinate
RIGHT horizontal, long-axis spot ellipse maximum pixel coordinate
UNF_VALUE aka LOG_RAT2N_MEAN, or log2 of ratio of CH2DN_MEAN and CH1DN_MEAN

Data table
ID_REF CH1B_MEAN CH1B_MEDIAN CH1D_MEAN CH2I_MEAN CH2D_MEAN CH2B_MEAN CH2B_MEDIAN CH2BN_MEDIAN CH2DN_MEAN CH2IN_MEAN CORR FLAG VALUE PIX_RAT2_MEDIAN PERGTBCH1I_1SD PERGTBCH2I_1SD RAT1_MEAN RAT1N_MEAN RAT2_MEAN RAT2N_MEAN REGR TOT_BPIX TOT_SPIX TOP BOT LEFT RIGHT UNF_VALUE
1 9 8 81 29 22 8 7 6 20 26 .716 0 -2.025 .313 80 76 3.682 4.071 .272 .246 .198 1142 177 76 91 104 119 -2.025
2 9 8 11 17 9 8 8 7 8 15 .774 0 -.434 .923 49 33 1.222 1.351 .818 .74 1.055 905 177 76 91 122 137 -.434
3 9 8 72 71 63 8 8 7 57 64 .869 0 -.338 .853 69 70 1.143 1.264 .875 .791 .788 918 177 76 91 139 154 -.338
4 8 7 3 11 3 8 8 7 3 10 .368 0 -.145 .929 40 35 1 1.106 1 .904 .338 886 177 77 92 157 172 -.145
5 8 7 61 61 53 8 8 7 48 55 .865 0 -.348 .847 76 67 1.151 1.273 .869 .786 .8 896 177 77 92 174 189 -.348
6 8 7 6 13 5 8 8 7 5 12 .59 0 -.408 .8 48 31 1.2 1.327 .833 .754 .577 906 177 77 92 192 207 -.408
7 9 8 2 9 1 8 8 7 1 8 .047 0 -1.145 1 29 28 2 2.211 .5 .452 .04 918 177 77 92 209 224 -1.145
8 9 8 2 10 2 8 8 7 2 9 .12 0 -.145 .889 35 30 1 1.106 1 .904 .134 896 177 78 93 227 242 -.145
9 9 8 1 8 9 8 7 0 7 -.125 0 1.1 30 24 -.12 896 177 78 93 244 259
10 9 9 8 9 8 7 0 7 .092 0 .882 28 27 .075 906 177 78 93 262 277
11 9 8 2 9 1 9 8 7 1 8 .05 0 -1.145 .733 32 33 2 2.211 .5 .452 .044 918 177 78 93 279 294 -1.145
12 8 7 1 9 1 9 8 7 1 8 .061 0 -.145 1.25 33 27 1 1.106 1 .904 .061 896 177 79 94 297 312 -.145
13 9 8 1 10 2 9 8 7 2 9 .126 0 .855 1 28 32 .5 .553 2 1.809 .123 896 177 79 94 314 329 .855
14 9 8 9 1 9 8 7 1 8 .064 0 1.25 21 29 .057 896 177 79 94 332 347
15 10 8 2 9 12 9 8 0 8 .049 0 .786 36 22 .044 892 177 79 94 349 364
16 12 9 9 22 10 9 -1 8 -.084 0 .833 22 16 -.083 918 177 79 94 366 381
17 12 10 9 22 11 10 -2 8 .13 0 1 16 12 .101 896 177 80 95 384 399
18 11 9 11 1 13 10 9 1 10 .002 0 1.333 24 25 .002 896 177 80 95 401 416
19 9 8 9 11 10 9 -1 8 -.2 0 2 19 20 -.196 896 177 80 95 419 434
20 10 8 9 17 10 9 -1 8 .144 0 .75 24 20 .136 918 177 80 95 436 451

Total number of rows: 9216

Table truncated, full table size 1041 Kbytes.




Supplementary data files not provided
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