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Sample GSM930 Query DataSets for GSM930
Status Public on Feb 12, 2002
Title heat shock 21 to 37, 20 minutes
Sample type RNA
 
Channel 1
Source name 21 t0
Organism Saccharomyces cerevisiae
Extracted molecule total RNA
 
Channel 2
Source name 37 t20
Organism Saccharomyces cerevisiae
Extracted molecule total RNA
 
 
Description ScanAlyze version 2.24 scanning software was used.
Keywords = starvation
Keywords = YPD-stationary-phase
Lot batch = y11n121
 
Submission date Feb 08, 2002
Last update date Nov 21, 2005
Organization Stanford Microarray Database (SMD)
E-mail(s) [email protected]
Phone 650-498-6012
URL http://genome-www5.stanford.edu/
Department Stanford University, School of Medicine
Street address 300 Pasteur Drive
City Stanford
State/province CA
ZIP/Postal code 94305
Country USA
 
Platform ID GPL51
Series (1)
GSE18 Yeast Stress Response

Data table header descriptions
ID_REF reference identifier
CH1B_MEAN mean of channel 1 background pixels
CH1B_MEDIAN median of channel 1 background pixels
CH1D_MEAN difference between CH1I_MEAN and CH1B_MEAN
CH2I_MEAN mean of channel 2 signal pixels
CH2D_MEAN difference of CH2I_MEAN and CH2B_MEAN
CH2B_MEAN mean of channel 2 background pixels
CH2B_MEDIAN median of channel 2 background pixels
CH2BN_MEDIAN normalized CH2B_MEDIAN
CH2DN_MEAN normalized CH2D_MEAN
CH2IN_MEAN normalized CH2I_MEAN
CORR simple correlation coefficient of channel 1 and channel 2 pixels
FLAG user defined flag (default=0)
VALUE same as UNF_VALUE but with flagged values removed
PIX_RAT2_MEDIAN
PERGTBCH1I_1SD standard deviation of fraction of pixels greater than CH1B_MEAN
PERGTBCH2I_1SD standard deviation of fraction of pixels greater than CH2B_MEAN
RAT1_MEAN ratio of CH1D_MEAN to CH2D_MEAN
RAT1N_MEAN ratio of CH1DN_MEAN to CH2DN_MEAN
RAT2_MEAN arithmetic mean of ratios of CH2D_MEAN to CH1D_MEAN
RAT2N_MEAN arithmetic mean of ratios of CH2DN_MEAN to CH1DN_MEAN
REGR slope of the simple regression line of channel 2 to channel 1 pixels
TOT_BPIX total number of background pixels
TOT_SPIX total number of signal (spot) pixels
TOP vertical, short-axis spot ellipse minimum pixel coordinate
BOT vertical, short-axis spot ellipse maximum pixel coordinate
LEFT horizontal, long-axis spot ellipse minimum pixel coordinate
RIGHT horizontal, long-axis spot ellipse maximum pixel coordinate
UNF_VALUE aka LOG_RAT2N_MEAN, or log2 of ratio of CH2DN_MEAN and CH1DN_MEAN

Data table
ID_REF CH1B_MEAN CH1B_MEDIAN CH1D_MEAN CH2I_MEAN CH2D_MEAN CH2B_MEAN CH2B_MEDIAN CH2BN_MEDIAN CH2DN_MEAN CH2IN_MEAN CORR FLAG VALUE PIX_RAT2_MEDIAN PERGTBCH1I_1SD PERGTBCH2I_1SD RAT1_MEAN RAT1N_MEAN RAT2_MEAN RAT2N_MEAN REGR TOT_BPIX TOT_SPIX TOP BOT LEFT RIGHT UNF_VALUE
1 9 6 68 19 13 13 6 7 16 23 .704 0 -2.087 .214 81 61 5.231 4.25 .191 .235 .175 1129 177 61 76 93 108 -2.087
2 35 6 55 107 101 79 6 7 125 132 .943 0 1.184 .971 51 46 .545 .44 1.836 2.273 2.208 896 177 61 76 110 125 1.184
3 34 5 104 82 76 76 6 7 94 101 .909 0 -.146 .718 78 74 1.368 1.106 .731 .904 .732 896 177 61 76 128 143 -.146
4 5 4 10 10 5 6 5 6 6 12 .91 0 -.737 .75 42 46 2 1.667 .5 .6 .424 928 177 60 75 145 160 -.737
5 5 4 105 82 77 6 5 6 95 101 .862 0 -.144 .737 72 73 1.364 1.105 .733 .905 .673 928 177 60 75 163 178 -.144
6 5 4 12 10 5 6 5 6 6 12 .842 0 -1 .667 45 38 2.4 2 .417 .5 .372 928 177 60 75 180 195 -1
7 5 4 1 5 6 5 6 6 .062 0 .7 35 32 .047 919 177 60 75 198 213
8 5 4 2 6 1 5 5 6 1 7 -.047 0 -1 .667 44 36 2 2 .5 .5 -.042 906 177 60 75 215 230 -1
9 5 4 1 6 1 5 5 6 1 7 -.053 0 0 1.333 34 37 1 1 1 1 -.064 896 177 60 75 233 248 0
10 7 4 1 5 9 5 6 6 -.029 0 .857 33 27 -.025 928 177 59 74 250 265
11 7 4 1 6 1 9 5 6 1 7 .014 0 0 .909 33 39 1 1 1 1 .014 928 177 59 74 268 283 0
12 5 4 7 2 6 5 6 3 9 .018 0 1.286 28 40 .021 928 177 59 74 285 300
13 6 4 1 5 6 5 6 6 .21 0 .8 36 32 .194 909 177 59 74 303 318
14 7 4 2 7 2 7 5 6 3 9 .32 0 .585 1 41 37 1 .667 1 1.5 .31 906 177 59 74 320 335 .585
15 6 4 1 5 1 7 4 5 1 6 .101 0 0 .667 35 33 1 1 1 1 .102 896 177 59 74 338 353 0
16 5 4 1 6 2 5 4 5 2 7 .021 0 1 1 34 42 .5 .5 2 2 .022 883 177 59 74 355 370 1
17 5 4 6 1 5 5 6 1 7 .142 0 1 27 38 .161 928 177 58 73 372 387
18 5 4 1 5 6 5 6 6 -.026 0 .778 31 27 -.025 928 177 58 73 390 405
19 5 4 6 1 6 5 6 1 7 .474 0 1 27 33 .455 928 177 58 73 407 422
20 5 4 4 6 5 6 5 .196 0 1 20 23 .17 919 177 58 73 425 440

Total number of rows: 9216

Table truncated, full table size 982 Kbytes.




Supplementary data files not provided
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