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Status
Public on Jan 31, 2006
Title
A12_Rep2
Sample type
RNA
Channel 1 Source name
Agrobacterium-inoculated, 12h, replication 2
Organism
Arabidopsis thaliana Characteristics
Arabidopsis thaliana cell suspension culture, LER ecotype.
Extracted molecule
total RNA
Label
Cy5
Channel 2 Source name
Reference RNA
Organism
Arabidopsis thaliana Characteristics
Arabidopsis thaliana cell suspension culture, LER ecotype.
Extracted molecule
total RNA
Label
Cy3
Description
Arabidopsis thaliana cell cultures sub-cultured every week. Agrobacterium- or mock-inoculated 3 days after sub-culture. Inoculated samples co-hybridized with reference RNA. Reference RNA: pool of RNA samples from mock-treated cell cultures.
Data processing
Lowess normalization (Cui et al., 2003) done in Matlab, analysis done with SAM (Tusher et al., 2001).
Submission date
Jan 29, 2006
Last update date
Jan 30, 2006
Contact name
Renata Fava Ditt
E-mail(s)
[email protected] Phone
(206)685-4755
Organization name
University of Washington
Street address
Hitchcock Hall Box 355325
City
Seattle
State/province
WA
ZIP/Postal code
98195
Country
USA
Platform ID
GPL1911 Series (1)
GSE4116 The Arabidopsis thaliana transcriptome in response to Agrobacterium tumefaciens
Data table header descriptions ID_REF VALUE normalized log2 ratios of inoculated/reference
Data table ID_REF VALUE A000001_01
-0.070473
A000002_01
-0.307521
A000003_01
0.058253
A000004_01
-0.128686
A000005_01
-0.079306
A000006_01
-0.074137
A000007_01
-0.206653
A000008_01
-0.03597
A000009_01
0.000679
A000010_01
-0.065656
A000011_01
-0.206118
A000012_01
-0.403474
A000013_01
1.752618
A000014_01
-0.033892
A000015_01
0.003228
A000016_01
-0.043064
A000017_01
-0.064374
A000018_01
0.019977
A000019_01
-0.026792
A000020_01
-0.211962
26474 529 Kbytes .Supplementary data files not provided
