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Status
Public on Jan 31, 2006
Title
A48_Rep3
Sample type
RNA
Channel 1 Source name
Agrobacterium-inoculated, 48h, replication 3
Organism
Arabidopsis thaliana Characteristics
Arabidopsis thaliana cell suspension culture, LER ecotype.
Extracted molecule
total RNA
Label
Cy5
Channel 2 Source name
Reference RNA
Organism
Arabidopsis thaliana Characteristics
Arabidopsis thaliana cell suspension culture, LER ecotype.
Extracted molecule
total RNA
Label
Cy3
Description
Arabidopsis thaliana cell cultures sub-cultured every week. Agrobacterium- or mock-inoculated 3 days after sub-culture. Inoculated samples co-hybridized with reference RNA. Reference RNA: pool of RNA samples from mock-treated cell cultures.
Data processing
Lowess normalization (Cui et al., 2003) done in Matlab, analysis done with SAM (Tusher et al., 2001).
Submission date
Jan 29, 2006
Last update date
Jan 30, 2006
Contact name
Renata Fava Ditt
E-mail(s)
[email protected] Phone
(206)685-4755
Organization name
University of Washington
Street address
Hitchcock Hall Box 355325
City
Seattle
State/province
WA
ZIP/Postal code
98195
Country
USA
Platform ID
GPL1911 Series (1)
GSE4116 The Arabidopsis thaliana transcriptome in response to Agrobacterium tumefaciens
Data table header descriptions ID_REF VALUE normalized log2 ratios of inoculated/reference
Data table ID_REF VALUE A000001_01
-0.055534
A000002_01
-0.483539
A000003_01
0.059533
A000004_01
-0.108177
A000005_01
0.009782
A000006_01
-0.060777
A000007_01
-0.264689
A000008_01
0.074504
A000009_01
0.047126
A000010_01
0.085587
A000011_01
-0.11421
A000012_01
0.327306
A000013_01
0.167046
A000014_01
0.217339
A000015_01
0.432653
A000016_01
0.401322
A000017_01
0.247539
A000018_01
0.279542
A000019_01
0.154913
A000020_01
0.199883
26474 524 Kbytes .Supplementary data files not provided
