GEO help: Mouse over screen elements for information.
Status
Public on Jan 31, 2006
Title
M04_Rep2
Sample type
RNA
Channel 1
Source name
Mock-inoculated, 4h, replication 2
Organism
Arabidopsis thaliana
Characteristics
Arabidopsis thaliana cell suspension culture, LER ecotype. Collected 4h after mock-inoculation.
Extracted molecule
total RNA
Label
Cy5
Channel 2
Source name
Reference RNA
Organism
Arabidopsis thaliana
Characteristics
Arabidopsis thaliana cell suspension culture, LER ecotype. Reference RNA.
Extracted molecule
total RNA
Label
Cy3
Description
Arabidopsis thaliana cell cultures sub-cultured every week. Agrobacterium- or mock-inoculated 3 days after sub-culture. Inoculated samples co-hybridized with reference RNA. Reference RNA: pool of RNA samples from mock-treated cell cultures.
Data processing
Lowess normalization (Cui et al., 2003) done in Matlab, analysis done with SAM (Tusher et al., 2001).
Submission date
Jan 29, 2006
Last update date
Jan 30, 2006
Contact name
Renata Fava Ditt
E-mail(s)
[email protected]
Phone
(206)685-4755
Organization name
University of Washington
Street address
Hitchcock Hall Box 355325
City
Seattle
State/province
WA
ZIP/Postal code
98195
Country
USA
Platform ID
GPL1911
Series (1)
GSE4116
The Arabidopsis thaliana transcriptome in response to Agrobacterium tumefaciens
Data table header descriptions
ID_REF
VALUE
normalized log2 ratios of inoculated/reference
Data table
ID_REF
VALUE
A000001_01
0.347435
A000002_01
-0.233433
A000003_01
0.275933
A000004_01
-0.158509
A000005_01
0.030312
A000006_01
-0.13169
A000007_01
-0.292131
A000008_01
0.057241
A000009_01
-0.199655
A000010_01
0.036082
A000011_01
-0.120603
A000012_01
-0.331806
A000013_01
1.491709
A000014_01
0.193674
A000015_01
-0.033183
A000016_01
0.040978
A000017_01
-0.104518
A000018_01
-0.054868
A000019_01
-0.077682
A000020_01
-0.300765
Total number of rows: 26474 Table truncated, full table size 528 Kbytes .Supplementary data files not provided