NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM94187 Query DataSets for GSM94187
Status Public on Jan 31, 2006
Title M04_Rep2
Sample type RNA
 
Channel 1
Source name Mock-inoculated, 4h, replication 2
Organism Arabidopsis thaliana
Characteristics Arabidopsis thaliana cell suspension culture, LER ecotype.
Collected 4h after mock-inoculation.
Extracted molecule total RNA
Label Cy5
 
Channel 2
Source name Reference RNA
Organism Arabidopsis thaliana
Characteristics Arabidopsis thaliana cell suspension culture, LER ecotype.
Reference RNA.
Extracted molecule total RNA
Label Cy3
 
 
Description Arabidopsis thaliana cell cultures sub-cultured every week. Agrobacterium- or mock-inoculated 3 days after sub-culture. Inoculated samples co-hybridized with reference RNA. Reference RNA: pool of RNA samples from mock-treated cell cultures.
Data processing Lowess normalization (Cui et al., 2003) done in Matlab, analysis done with SAM (Tusher et al., 2001).
 
Submission date Jan 29, 2006
Last update date Jan 30, 2006
Contact name Renata Fava Ditt
E-mail(s) [email protected]
Phone (206)685-4755
Organization name University of Washington
Street address Hitchcock Hall Box 355325
City Seattle
State/province WA
ZIP/Postal code 98195
Country USA
 
Platform ID GPL1911
Series (1)
GSE4116 The Arabidopsis thaliana transcriptome in response to Agrobacterium tumefaciens

Data table header descriptions
ID_REF
VALUE normalized log2 ratios of inoculated/reference

Data table
ID_REF VALUE
A000001_01 0.347435
A000002_01 -0.233433
A000003_01 0.275933
A000004_01 -0.158509
A000005_01 0.030312
A000006_01 -0.13169
A000007_01 -0.292131
A000008_01 0.057241
A000009_01 -0.199655
A000010_01 0.036082
A000011_01 -0.120603
A000012_01 -0.331806
A000013_01 1.491709
A000014_01 0.193674
A000015_01 -0.033183
A000016_01 0.040978
A000017_01 -0.104518
A000018_01 -0.054868
A000019_01 -0.077682
A000020_01 -0.300765

Total number of rows: 26474

Table truncated, full table size 528 Kbytes.




Supplementary data files not provided

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap