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GEO accession:
Sample GSM94227
Query DataSets for GSM94227
Status
Public on Mar 16, 2006
Title
AMKL patient sample_AMKL032
Sample type
RNA
Source name
bone marrow or peripheral blood
Organism
Homo sapiens
Characteristics
diagnostic sample
Extracted molecule
total RNA
Extraction protocol
mononuclear cells after Ficol gradient, RNA extract with TRIZOL and promega SV column
Label
biotin
Label protocol
2-10 µg of total RNA was processed to produce biotinylated cRNA targets.
Hybridization protocol
standard Affymetrix procedures
Scan protocol
standard Affymetrix procedures
Description
AMKL diagnostic sample
Data processing
Affymetrix Microarray Suite version 5.0
Submission date
Jan 30, 2006
Last update date
Mar 16, 2006
Contact name
Jean-Pierre Bourquin
E-mail(s)
[email protected]
Phone
+41 44 266 7304
Fax
+41 44 266 7171
Organization name
University Children's Hospital Zurich
Department
Pediatric Oncology
Lab
Molecular Oncology
Street address
Steinwiesstrasse 75
City
Zurich
ZIP/Postal code
8032
Country
Switzerland
Platform ID
GPL96
Series (1)
GSE4119
Expression profiling of acute megakaryoblastic leukemia
Data table header descriptions
ID_REF
VALUE
MAS5-calculated Signal intensity
ABS_CALL
the call in an absolute analysis that indicates if the transcript was present (P), absent (A), marginal (M), or no call (NC)
DETECTION P-VALUE
'detection p-value', p-value that indicates the significance level of the detection call
Data table
ID_REF
VALUE
ABS_CALL
DETECTION P-VALUE
AFFX-BioB-5_at
82.3
P
0.005565
AFFX-BioB-M_at
317.5
P
2.58E-04
AFFX-BioB-3_at
148.6
P
2.58E-04
AFFX-BioC-5_at
410.4
P
1.95E-04
AFFX-BioC-3_at
296.5
P
1.47E-04
AFFX-BioDn-5_at
285.3
P
6.00E-05
AFFX-BioDn-3_at
2284.9
P
1.10E-04
AFFX-CreX-5_at
4152.8
P
4.40E-05
AFFX-CreX-3_at
6021.1
P
4.40E-05
AFFX-DapX-5_at
14.5
A
0.102165
AFFX-DapX-M_at
13.3
A
0.250796
AFFX-DapX-3_at
3.5
A
0.794268
AFFX-LysX-5_at
4.3
A
0.559354
AFFX-LysX-M_at
12.1
A
0.574038
AFFX-LysX-3_at
1.4
A
0.772364
AFFX-PheX-5_at
3.2
A
0.783476
AFFX-PheX-M_at
3.7
A
0.824672
AFFX-PheX-3_at
6.4
A
0.724854
AFFX-ThrX-5_at
4.6
A
0.783476
AFFX-ThrX-M_at
6.8
A
0.51489
Total number of rows:
22283
Table truncated, full table size
583 Kbytes
.
Supplementary data files not provided
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