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Sample GSM948589 Query DataSets for GSM948589
Status Public on Nov 09, 2012
Title r18
Sample type RNA
 
Source name Human colon biopsies from UC patient with active disease (involved mucosa)
Organism Homo sapiens
Characteristics gender: female
age (years): 34
evolution time (years): 14
disease extension: Pancolitis
treatment: Azathioprine
Extracted molecule total RNA
Extraction protocol Total RNA was extracted by Rneasy Kit (Qiagen) according to the manufacturer's instructions.
Label biotin
Label protocol Biotinylated cRNA were prepared according to the standard Affymetrix protocol
 
Hybridization protocol Standard Affymetrix protocol
Scan protocol Standard Affymetrix protocol using a Gene chip scanner 3000
Description Gene expression data from human colon biopsies; involved area UC active patient
Data processing The data were analyzed with Bioconductor tools in R (http://www.r-project.org) using GC-RMA as normalization method. Next we employ a conservative probe-filtering step excluding those probe sets not reaching a log2 expression values of 5 in at least 1 sample.
 
Submission date Jun 14, 2012
Last update date Nov 10, 2012
Contact name Azucena Salas
E-mail(s) [email protected]
Organization name IDIBAPS
Department Gastroenterology
Street address Rosselló, 149-153
City Barcelona
ZIP/Postal code 08036
Country Spain
 
Platform ID GPL570
Series (1)
GSE38713 Expression data from intestinal mucosa of patients with UC

Data table header descriptions
ID_REF
VALUE log2 GC-RMA expression value

Data table
ID_REF VALUE
1007_s_at 9.503869375
1053_at 6.577203887
117_at 2.643727227
121_at 4.121958651
1255_g_at 2.23999739
1294_at 7.442223854
1316_at 2.953852728
1320_at 2.917097688
1405_i_at 8.107055361
1431_at 2.625201171
1438_at 6.683893223
1487_at 8.413781167
1494_f_at 2.262453519
1552256_a_at 6.640611387
1552257_a_at 8.78520932
1552258_at 2.327820463
1552261_at 2.595263265
1552263_at 5.941744365
1552264_a_at 7.395604761
1552266_at 2.665710235

Total number of rows: 54675

Table truncated, full table size 1212 Kbytes.




Supplementary file Size Download File type/resource
GSM948589_r18.cel.gz 7.6 Mb (ftp)(http) CEL
Processed data included within Sample table

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