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Sample GSM96262 Query DataSets for GSM96262
Status Public on Dec 01, 2006
Title HFF2_T1_R1, Monolayer
Sample type RNA
 
Source name Human Foreskin Fibroblast (HFF2) Primary Cells
Organism Homo sapiens
Extracted molecule total RNA
 
Description 60% confluent human foreskin fibroblast (HFF2) primary cells were split into suspension over agarose to form spheroids and grown for an additional 4 days in suspension over agarose prepared with 15% FBS supplemented DMEM.
Following growth, media was removed and the spheroids were stored on the surface of the agarose in vacuum sealed flasks for a 2 week interval at room temperature in the dark.
The samples were compared against monolayer (at 60% confluence). All samples were conducted in triplicate.
Samples from the two week arrest were removed from storage and supplemented with DMEM (Invitrogen) containing 15% FBS (spheroid recovery sample). These cells were then allowed to grow out as adherent monolayers for 7 days (monolayer recovery sample).
 
Submission date Feb 08, 2006
Last update date Aug 28, 2018
Contact name Richard F. Helm
E-mail(s) [email protected]
Phone 540-231-4088
Fax 540-231-9070
URL http://vigen.biochem.vt.edu
Organization name Virginia Polytechnic Institute and State University
Department Biochemistry, Fralin Biotechnology Center
Lab Virginia Tech Center for Genomics
Street address West Campus Drive
City Blacksburg
State/province VA
ZIP/Postal code 24061
Country USA
 
Platform ID GPL570
Series (2)
GSE4217 Spheroid Formation and Recovery of Human Foreskin Fibroblasts at Ambient Temperature
GSE4219 Spheroid Formation and Recovery of Human Foreskin Fibroblasts and T98G Glioma Cells at Ambient Temperature
Relations
Reanalyzed by GSE64985
Reanalyzed by GSE119087

Data table header descriptions
ID_REF
VALUE 'signal' a measure of the abundance of a transcript
BASELINE baseline intensity
ABS_CALL the call in an absolute analysis that indicates if the transcript was present (P), absent (A), marginal (M), or no call (NC)
DETECTION P-VALUE 'detection p-value', p-value that indicates the significance level of the detection call

Data table
ID_REF VALUE BASELINE ABS_CALL DETECTION P-VALUE
1007_s_at 51 48 A 0.066864945
220592_at 8 9 A 0.19458
220591_s_at 9 9 A 0.334473
220590_at 38 40 A 0.219482
220589_s_at 27 28 A 0.171387
220588_at 17 19 A 0.828613
220587_s_at 51 50 A 0.111572
220586_at 7 7 P 0.0141602
220585_at 8 8 A 0.80542
220584_at 9 8 A 0.919434
220583_at 35 39 A 0.19458
220582_at 12 13 A 0.80542
220581_at 10 10 A 0.366211
220580_at 12 12 P 0.00585938
220579_at 7 9 A 0.976074
220578_at 6 7 A 0.366211
220577_at 9 9 A 0.398926
220576_at 13 12 P 0.0461426
220575_at 13 12 P 0.0185547
220574_at 8 8 A 0.149658

Total number of rows: 54675

Table truncated, full table size 1522 Kbytes.




Supplementary file Size Download File type/resource
GSM96262.CEL.gz 7.9 Mb (ftp)(http) CEL
GSM96262.CHP.gz 299.3 Kb (ftp)(http) CHP
Processed data provided as supplementary file

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