NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM96265 Query DataSets for GSM96265
Status Public on Dec 01, 2006
Title HFF2_T2_R1, Spheroid
Sample type RNA
 
Source name Human Foreskin Fibroblast (HFF2) Primary Cells
Organism Homo sapiens
Extracted molecule total RNA
 
Description 60% confluent human foreskin fibroblast (HFF2) primary cells were split into suspension over agarose to form spheroids and grown for an additional 4 days in suspension over agarose prepared with 15% FBS supplemented DMEM.
Following growth, media was removed and the spheroids were stored on the surface of the agarose in vacuum sealed flasks for a 2 week interval at room temperature in the dark.
The samples were compared against monolayer (at 60% confluence). All samples were conducted in triplicate.
Samples from the two week arrest were removed from storage and supplemented with DMEM (Invitrogen) containing 15% FBS (spheroid recovery sample). These cells were then allowed to grow out as adherent monolayers for 7 days (monolayer recovery sample).
 
Submission date Feb 08, 2006
Last update date Aug 28, 2018
Contact name Richard F. Helm
E-mail(s) [email protected]
Phone 540-231-4088
Fax 540-231-9070
URL http://vigen.biochem.vt.edu
Organization name Virginia Polytechnic Institute and State University
Department Biochemistry, Fralin Biotechnology Center
Lab Virginia Tech Center for Genomics
Street address West Campus Drive
City Blacksburg
State/province VA
ZIP/Postal code 24061
Country USA
 
Platform ID GPL570
Series (2)
GSE4217 Spheroid Formation and Recovery of Human Foreskin Fibroblasts at Ambient Temperature
GSE4219 Spheroid Formation and Recovery of Human Foreskin Fibroblasts and T98G Glioma Cells at Ambient Temperature
Relations
Reanalyzed by GSE64985
Reanalyzed by GSE119087

Data table header descriptions
ID_REF
VALUE 'signal' a measure of the abundance of a transcript
BASELINE baseline intensity
ABS_CALL the call in an absolute analysis that indicates if the transcript was present (P), absent (A), marginal (M), or no call (NC)
DETECTION P-VALUE 'detection p-value', p-value that indicates the significance level of the detection call

Data table
ID_REF VALUE BASELINE ABS_CALL DETECTION P-VALUE
1007_s_at 67 48 A 0.23455657
220592_at 8 9 A 0.398926
220591_s_at 14 9 P 0.0239258
220590_at 58 40 A 0.171387
220589_s_at 33 28 A 0.27417
220588_at 21 19 A 0.366211
220587_s_at 63 50 A 0.246094
220586_at 7 7 A 0.129639
220585_at 10 8 A 0.696289
220584_at 9 8 A 0.888428
220583_at 62 39 A 0.27417
220582_at 23 13 A 0.567627
220581_at 13 10 P 0.0375977
220580_at 12 12 A 0.129639
220579_at 12 9 A 0.943848
220578_at 8 7 A 0.5
220577_at 10 9 P 0.000244141
220576_at 14 12 A 0.0952148
220575_at 21 12 P 0.00805664
220574_at 10 8 M 0.0561523

Total number of rows: 54675

Table truncated, full table size 1510 Kbytes.




Supplementary file Size Download File type/resource
GSM96265.CEL.gz 8.0 Mb (ftp)(http) CEL
GSM96265.CHP.gz 297.4 Kb (ftp)(http) CHP
Processed data provided as supplementary file

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap