NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM971942 Query DataSets for GSM971942
Status Public on Jul 23, 2014
Title ZT16.5_unpulsed1
Sample type RNA
 
Source name head
Organism Drosophila melanogaster
Characteristics strain: Canton-S
treatment protocol: control
Treatment protocol After 4 days in LD 12:12, adult files (age 3-5 d) were exposed to 30 min saturating light pulse at ZT 15 (3 hr after lights off), and were snap frozen after 1 hr (Zt 16.5)
Growth protocol Flies were maintened at 25deg. C on standard sugar media
Extracted molecule total RNA
Extraction protocol Trizol extraction of total RNA from fly heads was performed according to the manufacturer's instructions.
Label biotin
Label protocol Affymetrix GeneChip® IVT Labeling Kit, according to manufacturer's protocol
 
Hybridization protocol Affymetrix Eukaryotic Target Hybridization protocol
Scan protocol Affymetrix protocol.
Data processing R/Bioconductor affylmGUI package (version 1.8.0)
 
Submission date Jul 23, 2012
Last update date Jul 23, 2014
Contact name Eran Tauber
Organization name University of Leicester
Department Genetics
Street address University Road
City Leicester
ZIP/Postal code LE1 7RH
Country United Kingdom
 
Platform ID GPL1322
Series (1)
GSE39578 Expression analysis of circadian light response in Drosophila

Data table header descriptions
ID_REF
VALUE log-2 GCRMA signal

Data table
ID_REF VALUE
1616608_a_at 12.38082478
1622892_s_at 6.046855821
1622893_at 14.22088008
1622894_at 6.618599951
1622895_at 6.553000693
1622896_at 8.565304154
1622897_at 2.343939835
1622898_a_at 7.221646421
1622899_at 2.721388375
1622900_at 2.239991004
1622901_at 2.31267913
1622902_at 5.196605329
1622903_s_at 7.252974395
1622904_at 2.054270263
1622905_at 2.629723831
1622906_at 6.56084504
1622907_at 7.669942891
1622908_a_at 6.707922865
1622909_at 7.504276498
1622910_at 2.33611339

Total number of rows: 18952

Table truncated, full table size 432 Kbytes.




Supplementary file Size Download File type/resource
GSM971942_CS_ZT_16.5_unpulsed_1.CEL.gz 1.8 Mb (ftp)(http) CEL
Processed data included within Sample table

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap