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Status
Public on Feb 25, 2006
Title
Affymetrix chip HG-U133A, siPTHrP 1
Sample type
RNA
Source name
Breast cancer
Organism
Homo sapiens Characteristics
Cell line: MDA-MB-231
Extracted molecule
total RNA
Extraction protocol
RNeasy
Label
Biotin
Description
This sample was analyzed as part of aproject aiming to identify PTHrP-responsive genes. Cells were either transfected with siPTHrP or control siRNA (siLuc) and harvested 3 days later for RNA isolation. The RNA of this samples derived from cells treated with siPTHrP (1).
Data processing
Calculated using the MAS5 algorithm where sc=1500, tau=0.015, alpha1=0.05, and alpha2=0.065
Submission date
Feb 23, 2006
Last update date
Feb 24, 2006
Contact name
Juergen Dittmer
E-mail(s)
[email protected] Phone
+49-345-557-1338
Fax
+49-345-557-5261
Organization name
University of Halle
Department
Clinic of Gynecology
Lab
Research Lab
Street address
Ernst-Grube-Str.40
City
Halle (Saale)
ZIP/Postal code
06120
Country
Germany
Platform ID
GPL96 Series (1)
GSE4292 PTHrP-responsive genes in breast cancer
Data table header descriptions ID_REF VALUE 'signal' a measure of the abundance of a transcript. Calculated using the MAS5 algorithm where sc=1500, tau=0.015, alpha1=0.05, and alpha2=0.065
ABS_CALL the call in an absolute analysis that indicates if the transcript was present (P), absent (A), marginal (M), or no call (NC)
DETECTION P-VALUE p-value that indicates the significance level of the detection call
Data table ID_REF VALUE ABS_CALL DETECTION P-VALUE AFFX-BioB-5_at
2425
P
0.000581
AFFX-BioB-M_at
4514
P
0.000052
AFFX-BioB-3_at
2147
P
0.000127
AFFX-BioC-5_at
6067
P
0.000081
AFFX-BioC-3_at
4217
P
0.00006
AFFX-BioDn-5_at
4607
P
0.00007
AFFX-BioDn-3_at
28782
P
0.000095
AFFX-CreX-5_at
59314
P
0.000044
AFFX-CreX-3_at
92906
P
0.000044
AFFX-DapX-5_at
18595
P
0.000044
AFFX-DapX-M_at
38939
P
0.000052
AFFX-DapX-3_at
52978
P
0.000044
AFFX-LysX-5_at
5197
P
0.000044
AFFX-LysX-M_at
8027
P
0.000044
AFFX-LysX-3_at
15485
P
0.000044
AFFX-PheX-5_at
1695
P
0.000052
AFFX-PheX-M_at
2101
P
0.000147
AFFX-PheX-3_at
2919
P
0.000095
AFFX-ThrX-5_at
767
P
0.011384
AFFX-ThrX-M_at
1140
P
0.004017
22283 565 Kbytes .Supplementary data files not provided
