GEO help: Mouse over screen elements for information.
Status
Public on Feb 25, 2006
Title
Affymetrix chip HG-U133A, siPTHrP 3
Sample type
RNA
Source name
Breast cancer
Organism
Homo sapiens Characteristics
Cell line: MDA-MB-231
Extracted molecule
total RNA
Extraction protocol
RNeasy
Label
Biotin
Description
This sample was analyzed as part of aproject aiming to identify PTHrP-responsive genes. Cells were either transfected with siPTHrP or control siRNA (siLuc) and harvested 3 days later for RNA isolation. The RNA of this samples derived from cells treated with siPTHrP (3).
Data processing
Calculated using the MAS5 algorithm where sc=1500, tau=0.015, alpha1=0.05, and alpha2=0.065
Submission date
Feb 23, 2006
Last update date
Feb 24, 2006
Contact name
Juergen Dittmer
E-mail(s)
[email protected] Phone
+49-345-557-1338
Fax
+49-345-557-5261
Organization name
University of Halle
Department
Clinic of Gynecology
Lab
Research Lab
Street address
Ernst-Grube-Str.40
City
Halle (Saale)
ZIP/Postal code
06120
Country
Germany
Platform ID
GPL96 Series (1)
GSE4292 PTHrP-responsive genes in breast cancer
Data table header descriptions ID_REF VALUE 'signal' a measure of the abundance of a transcript. Calculated using the MAS5 algorithm where sc=1500, tau=0.015, alpha1=0.05, and alpha2=0.065
ABS_CALL the call in an absolute analysis that indicates if the transcript was present (P), absent (A), marginal (M), or no call (NC)
DETECTION P-VALUE p-value that indicates the significance level of the detection call
Data table ID_REF VALUE ABS_CALL DETECTION P-VALUE AFFX-BioB-5_at
8624
P
0.000258
AFFX-BioB-M_at
17044
P
0.000044
AFFX-BioB-3_at
11099
P
0.000052
AFFX-BioC-5_at
21191
P
0.00007
AFFX-BioC-3_at
17928
P
0.000044
AFFX-BioDn-5_at
17060
P
0.000052
AFFX-BioDn-3_at
97753
P
0.000044
AFFX-CreX-5_at
180846
P
0.000044
AFFX-CreX-3_at
292015
P
0.000044
AFFX-DapX-5_at
17220
P
0.000052
AFFX-DapX-M_at
48979
P
0.000052
AFFX-DapX-3_at
70191
P
0.000044
AFFX-LysX-5_at
4209
P
0.000044
AFFX-LysX-M_at
7739
P
0.000044
AFFX-LysX-3_at
14004
P
0.000044
AFFX-PheX-5_at
1468
P
0.00006
AFFX-PheX-M_at
1734
P
0.000195
AFFX-PheX-3_at
6282
P
0.000127
AFFX-ThrX-5_at
763
P
0.010317
AFFX-ThrX-M_at
1111
P
0.004017
22283 565 Kbytes .Supplementary data files not provided
