|
| Status |
Public on Mar 06, 2007 |
| Title |
Smoker diagnosed with cancer Sample 308 |
| Sample type |
RNA |
| |
|
| Source name |
Bronchial Epithelium
|
| Organism |
Homo sapiens |
| Characteristics |
Sample from smoker diagnosed with cancer
sample_id: 308
age: 55
gender: M
race: CAU
cancer_status: Cancer
smoking_status: quit less than 10 years
packyears: 78
bronch_status: diagnostic
presence_of_hemopytsis: 0
presence_of_lymphadenopathy: 1
mass_size_greater_than_3cm: 1
biomarker_score: -4.96869603
subjective_assessment: High
|
| Extracted molecule |
total RNA |
| Extraction protocol |
RNA was extracted by using TRIzol Reagent (Invitrogen) according to the manufacturer's protocol
|
| Label |
Biotin
|
| Label protocol |
Affymetrix Suggested Protocol
|
| |
|
| Hybridization protocol |
Affymetrix Suggested Protocol
|
| Scan protocol |
Affymetrix Suggested Protocol
|
| Description |
RNA isolated from bronchial epithelial cells obtained during time of clinical bronchoscopy of cigarette smoking patients with suspect lung cancer
|
| Data processing |
RMA (Robust Multichip Average) generated expression value
|
| |
|
| Submission date |
Mar 03, 2006 |
| Last update date |
Nov 16, 2009 |
| Contact name |
Avrum Spira |
| E-mail(s) |
[email protected]
|
| Phone |
617-638-4860
|
| Fax |
617-536-8093
|
| URL |
http://www.pulmonomics.com
|
| Organization name |
Boston University Medical Center
|
| Department |
Pulmonary and Critical Care Medicine
|
| Lab |
Pulmonomics Lab
|
| Street address |
715 Albany Street, R304
|
| City |
Boston |
| State/province |
MA |
| ZIP/Postal code |
02118 |
| Country |
USA |
| |
|
| Platform ID |
GPL96 |
| Series (1) |
| GSE4115 |
Airway Epithelial Gene Expression Diagnostic for the Evaluation of Smokers with Suspect Lung Cancer |
|
