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Sample GSM988 Query DataSets for GSM988
Status Public on Feb 12, 2002
Title alpha factor release sample017
Sample type RNA
 
Channel 1
Source name asynchronous control
Organism Saccharomyces cerevisiae
Extracted molecule total RNA
 
Channel 2
Source name 17
Organism Saccharomyces cerevisiae
Extracted molecule total RNA
 
 
Description ScanAlyze version 2.33 scanning software was used.
Keywords = Cell-cycle
Keywords = Alpha factor block-release
Lot batch = y744n88
 
Submission date Feb 08, 2002
Last update date Nov 21, 2005
Organization Stanford Microarray Database (SMD)
E-mail(s) [email protected]
Phone 650-498-6012
URL http://genome-www5.stanford.edu/
Department Stanford University, School of Medicine
Street address 300 Pasteur Drive
City Stanford
State/province CA
ZIP/Postal code 94305
Country USA
 
Platform ID GPL59
Series (1)
GSE22 Alpha-factor block-release

Data table header descriptions
ID_REF reference identifier
CH1B_MEAN mean of channel 1 background pixels
CH1B_MEDIAN median of channel 1 background pixels
CH1D_MEAN difference between CH1I_MEAN and CH1B_MEAN
CH2I_MEAN mean of channel 2 signal pixels
CH2D_MEAN difference of CH2I_MEAN and CH2B_MEAN
CH2B_MEAN mean of channel 2 background pixels
CH2B_MEDIAN median of channel 2 background pixels
CH2BN_MEDIAN normalized CH2B_MEDIAN
CH2DN_MEAN normalized CH2D_MEAN
CH2IN_MEAN normalized CH2I_MEAN
CORR simple correlation coefficient of channel 1 and channel 2 pixels
FLAG user defined flag (default=0)
VALUE same as UNF_VALUE but with flagged values removed
PIX_RAT2_MEDIAN
PERGTBCH1I_1SD standard deviation of fraction of pixels greater than CH1B_MEAN
PERGTBCH2I_1SD standard deviation of fraction of pixels greater than CH2B_MEAN
RAT1_MEAN ratio of CH1D_MEAN to CH2D_MEAN
RAT1N_MEAN ratio of CH1DN_MEAN to CH2DN_MEAN
RAT2_MEAN arithmetic mean of ratios of CH2D_MEAN to CH1D_MEAN
RAT2N_MEAN arithmetic mean of ratios of CH2DN_MEAN to CH1DN_MEAN
REGR slope of the simple regression line of channel 2 to channel 1 pixels
TOT_BPIX total number of background pixels
TOT_SPIX total number of signal (spot) pixels
TOP vertical, short-axis spot ellipse minimum pixel coordinate
BOT vertical, short-axis spot ellipse maximum pixel coordinate
LEFT horizontal, long-axis spot ellipse minimum pixel coordinate
RIGHT horizontal, long-axis spot ellipse maximum pixel coordinate
UNF_VALUE aka LOG_RAT2N_MEAN, or log2 of ratio of CH2DN_MEAN and CH1DN_MEAN

Data table
ID_REF CH1B_MEAN CH1B_MEDIAN CH1D_MEAN CH2I_MEAN CH2D_MEAN CH2B_MEAN CH2B_MEDIAN CH2BN_MEDIAN CH2DN_MEAN CH2IN_MEAN CORR FLAG VALUE PIX_RAT2_MEDIAN PERGTBCH1I_1SD PERGTBCH2I_1SD RAT1_MEAN RAT1N_MEAN RAT2_MEAN RAT2N_MEAN REGR TOT_BPIX TOT_SPIX TOP BOT LEFT RIGHT UNF_VALUE
1 382 368 348 696 248 451 448 605 336 941 .719 0 -.051 .857 20 15 1.403 1.036 .713 .966 .482 1086 82 21 32 79 90 -.051
2 375 360 465 711 255 465 456 616 345 961 .788 0 -.431 .564 35 24 1.824 1.348 .548 .742 .449 856 82 21 32 89 100 -.431
3 392 352 105 504 48 470 456 616 65 681 .771 0 -.692 .647 18 10 2.188 1.615 .457 .619 .552 734 82 21 32 99 110 -.692
4 413 360 61 501 45 471 456 616 61 677 .636 0 0 .923 17 12 1.356 1 .738 1 .491 734 82 21 32 109 120 0
5 426 368 215 620 164 479 456 616 222 838 .81 0 .046 1 26 24 1.311 .968 .763 1.033 .693 734 87 21 32 119 130 .046
6 433 384 89 533 77 477 456 616 104 720 .448 0 .225 .75 14 10 1.156 .856 .865 1.169 .387 734 87 21 32 129 140 .225
7 419 384 121 507 51 475 456 616 69 685 .607 0 -.81 .727 21 8 2.373 1.754 .421 .57 .367 737 87 21 32 139 150 -.81
8 390 368 374 654 214 455 440 595 289 884 .916 0 -.372 .563 40 27 1.748 1.294 .572 .773 .587 742 87 21 32 149 160 -.372
9 365 352 82 493 69 434 424 573 93 666 .723 0 .182 .831 17 10 1.188 .882 .841 1.134 .468 747 87 21 32 159 170 .182
10 348 336 95 487 71 419 416 562 96 658 .804 0 .015 .709 18 14 1.338 .99 .747 1.011 .588 752 87 21 32 169 180 .015
11 337 328 76 465 57 414 408 551 77 628 .603 0 .019 .967 18 14 1.333 .987 .75 1.013 .592 757 87 21 32 179 190 .019
12 325 328 77 461 53 410 408 551 72 623 .672 0 -.097 .649 17 13 1.453 1.069 .688 .935 .477 756 87 21 32 189 200 -.097
13 323 320 35 398 408 400 541 538 .716 0 .565 5 2 .471 755 87 21 32 199 210
14 333 320 25 420 20 413 400 541 27 568 .478 0 .111 .909 6 4 1.25 .926 .8 1.08 .375 754 87 21 32 209 220 .111
15 342 328 110 446 38 421 408 551 52 603 .783 0 -1.081 .649 9 6 2.895 2.115 .345 .473 .396 751 87 21 32 219 230 -1.081
16 344 328 10 397 468 416 562 536 .494 0 1 6 2 .325 751 87 21 32 229 240
17 349 336 55 446 22 474 424 573 30 603 .622 0 -.874 1.2 9 8 2.5 1.833 .4 .545 .399 751 87 21 32 239 250 -.874
18 340 336 59 678 254 469 424 573 343 916 .598 0 2.539 .625 6 5 .232 .172 4.305 5.814 7.585 751 87 21 32 249 260 2.539
19 333 328 15977 508 92 460 416 562 124 686 0 0 -7.01 .01 68 22 173.663 128.847 .006 .008 0 751 87 21 32 259 270 -7.01
20 329 328 251 1338 930 419 408 551 1257 1808 .657 0 2.324 2.975 35 54 .27 .2 3.705 5.008 2.462 751 87 21 32 269 280 2.324

Total number of rows: 7680

Table truncated, full table size 916 Kbytes.




Supplementary data files not provided
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