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Status
Public on Mar 08, 2006
Title
brain, Right Frontal Lobe: Extract61_le1
Sample type
RNA
Source name
brain, Right Frontal Lobe
Organism
Homo sapiens Characteristics
tissue: brain, Right Frontal Lobe
Extracted molecule
total RNA
Extraction protocol
RNA extraction was performed as described previously (Mischel PS, Shai R, Shi T, et al Identification of molecular subtypes of glioblastoma by gene expression profiling. Oncogene, 2003;22:2361-73) and analyzed on both a spectrophotometer and Agilent 2100 Bioanalyzer (Agilent Technologies, Palo Alto, CA).
Label protocol
Probes were prepared using standard Affymetrix protocols and hybridized to Affymetrix HG-U133A and HG-U133B arrays (Affymetrix, Santa Clara, CA).
Hybridization protocol
Standard Affymetrix protocols were used.
Scan protocol
Standard Affymetrix protocols were used.
Description
GBM
Submission date
Mar 08, 2006
Last update date
Sep 11, 2014
Contact name
Winnie Liang
E-mail(s)
[email protected] Organization name
Translational Genomics
Street address
445 N. Fifth Street
City
Phoenix
State/province
AZ
ZIP/Postal code
85012
Country
USA
Platform ID
GPL96 Series (1)
Relations Reanalyzed by
GSM326705 Reanalyzed by
GSE61335
Data table header descriptions ID_REF The name of the probe set, blank for control probes
VALUE The signal value calculated by MAS 5 or GCOS software.
ABS_CALL The detection value calculated by the MAS 5 or GCOS software
DETECTION P-VALUE The detection p-value calculated by the MAS 5 or GCOS software
Data table ID_REF VALUE ABS_CALL DETECTION P-VALUE AFFX-BioB-5_at
1637.8699
P
0.009337
AFFX-BioB-M_at
2322.4666
P
0.001593
AFFX-BioB-3_at
1262.9415
P
0.007620
AFFX-BioC-5_at
4972.6934
P
0.000169
AFFX-BioC-3_at
3411.48
P
0.000060
AFFX-BioDn-5_at
3625.0847
P
0.000081
AFFX-BioDn-3_at
25916.012
P
0.000127
AFFX-CreX-5_at
35104.492
P
0.000044
AFFX-CreX-3_at
51137.72
P
0.000044
AFFX-DapX-5_at
70.48712
A
0.425962
AFFX-DapX-M_at
155.66634
A
0.368438
AFFX-DapX-3_at
15.443074
A
0.949771
AFFX-LysX-5_at
43.91605
A
0.631562
AFFX-LysX-M_at
94.58374
A
0.804734
AFFX-LysX-3_at
140.70222
A
0.239063
AFFX-PheX-5_at
11.273223
A
0.916408
AFFX-PheX-M_at
13.028938
A
0.981719
AFFX-PheX-3_at
107.7463
A
0.724854
AFFX-ThrX-5_at
109.58705
A
0.455413
AFFX-ThrX-M_at
55.88278
A
0.588620
22283 687 Kbytes .Supplementary file Size Download File type/resource GSM99438.CEL.gz
3.5 Mb
(ftp) (http) CEL
