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Sample GSM99452

Query DataSets for GSM99452

Status

Public on Mar 08, 2006

Title

brain, Right Frontal Temporal: Extract68_le1

Sample type

RNA

Source name

brain, Right Frontal Temporal

Organism

Homo sapiens

Characteristics

tissue: brain, Right Frontal Temporal
histology: GBM
tumor number (as appears in figure 3): 706
age: 54
gender: MALE
grade: 4
living: DECEASED
survival time: 506
survival cluster: SC1
hc_74_samples: HC1B
hc_85_samples: HC1B
array: 133A

Extracted molecule

total RNA

Extraction protocol

RNA extraction was performed as described previously (Mischel PS, Shai R, Shi T, et al Identification of molecular subtypes of glioblastoma by gene expression profiling. Oncogene, 2003;22:2361-73) and analyzed on both a spectrophotometer and Agilent 2100 Bioanalyzer (Agilent Technologies, Palo Alto, CA).

Label protocol

Probes were prepared using standard Affymetrix protocols and hybridized to Affymetrix HG-U133A and HG-U133B arrays (Affymetrix, Santa Clara, CA).

Hybridization protocol

Standard Affymetrix protocols were used.

Scan protocol

Standard Affymetrix protocols were used.

Description

GBM
Treatment, type=remove

Submission date

Mar 08, 2006

Last update date

Sep 11, 2014

Contact name

Winnie Liang

E-mail(s)

[email protected]

Organization name

Translational Genomics

Street address

445 N. Fifth Street

City

Phoenix

State/province

ZIP/Postal code

85012

Country

USA

Platform ID

GPL96

Series (1)

GSE4412

freij-affy-human-91666

Relations

Reanalyzed by

GSM326703

Reanalyzed by

GSE61335

Data table header descriptions
ID_REF	The name of the probe set, blank for control probes
VALUE	The signal value calculated by MAS 5 or GCOS software.
ABS_CALL	The detection value calculated by the MAS 5 or GCOS software
DETECTION P-VALUE	The detection p-value calculated by the MAS 5 or GCOS software

Data table
ID_REF	VALUE	ABS_CALL	DETECTION P-VALUE
AFFX-BioB-5_at	2189.738	P	0.007620
AFFX-BioB-M_at	2052.5405	P	0.001410
AFFX-BioB-3_at	1170.099	P	0.042962
AFFX-BioC-5_at	4891.0747	P	0.000662
AFFX-BioC-3_at	3983.5356	P	0.000147
AFFX-BioDn-5_at	3841.9067	P	0.000169
AFFX-BioDn-3_at	33390.57	P	0.000127
AFFX-CreX-5_at	35055.242	P	0.000044
AFFX-CreX-3_at	53018.54	P	0.000044
AFFX-DapX-5_at	55.012897	A	0.396920
AFFX-DapX-M_at	198.23083	A	0.396920
AFFX-DapX-3_at	38.860626	A	0.904333
AFFX-LysX-5_at	36.14925	A	0.631562
AFFX-LysX-M_at	497.291	A	0.440646
AFFX-LysX-3_at	109.98552	A	0.425962
AFFX-PheX-5_at	21.208542	A	0.921998
AFFX-PheX-M_at	24.821964	A	0.963431
AFFX-PheX-3_at	104.71347	A	0.783476
AFFX-ThrX-5_at	63.594418	A	0.749204
AFFX-ThrX-M_at	210.69682	A	0.455413

Total number of rows: 22283

Table truncated, full table size 687 Kbytes.

Supplementary file	Size	Download	File type/resource
GSM99452.CEL.gz	3.5 Mb	(ftp)(http)	CEL