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Status
Public on Mar 08, 2006
Title
brain, Right Parietal Lobe: Extract71_le2
Sample type
RNA
Source name
brain, Right Parietal Lobe
Organism
Homo sapiens Characteristics
tissue: brain, Right Parietal Lobe
Extracted molecule
total RNA
Extraction protocol
RNA extraction was performed as described previously (Mischel PS, Shai R, Shi T, et al Identification of molecular subtypes of glioblastoma by gene expression profiling. Oncogene, 2003;22:2361-73) and analyzed on both a spectrophotometer and Agilent 2100 Bioanalyzer (Agilent Technologies, Palo Alto, CA).
Label protocol
Probes were prepared using standard Affymetrix protocols and hybridized to Affymetrix HG-U133A and HG-U133B arrays (Affymetrix, Santa Clara, CA).
Hybridization protocol
Standard Affymetrix protocols were used.
Scan protocol
Standard Affymetrix protocols were used.
Description
GBM
Submission date
Mar 08, 2006
Last update date
May 22, 2013
Contact name
Winnie Liang
E-mail(s)
[email protected] Organization name
Translational Genomics
Street address
445 N. Fifth Street
City
Phoenix
State/province
AZ
ZIP/Postal code
85012
Country
USA
Platform ID
GPL97 Series (1)
Data table header descriptions ID_REF The name of the probe set, blank for control probes
VALUE The signal value calculated by MAS 5 or GCOS software.
ABS_CALL The detection value calculated by the MAS 5 or GCOS software
DETECTION P-VALUE The detection p-value calculated by the MAS 5 or GCOS software
Data table ID_REF VALUE ABS_CALL DETECTION P-VALUE AFFX-BioB-5_at
4699.8115
P
0.002275
AFFX-BioB-M_at
11510.608
P
0.000147
AFFX-BioB-3_at
4754.1777
P
0.003212
AFFX-BioC-5_at
13503.483
P
0.000127
AFFX-BioC-3_at
11668.768
P
0.000095
AFFX-BioDn-5_at
10336.836
P
0.000070
AFFX-BioDn-3_at
76803.945
P
0.000070
AFFX-CreX-5_at
129142.625
P
0.000044
AFFX-CreX-3_at
209959.55
P
0.000044
AFFX-DapX-5_at
625.96796
A
0.078002
AFFX-DapX-M_at
426.18793
A
0.368438
AFFX-DapX-3_at
480.4304
A
0.783476
AFFX-LysX-5_at
497.83685
A
0.287743
AFFX-LysX-M_at
90.09421
A
0.883887
AFFX-LysX-3_at
184.54662
A
0.440646
AFFX-PheX-5_at
69.633484
A
0.897835
AFFX-PheX-M_at
95.89885
A
0.897835
AFFX-PheX-3_at
206.91037
A
0.834139
AFFX-ThrX-5_at
64.71023
A
0.843268
AFFX-ThrX-M_at
151.11014
A
0.794268
22645 686 Kbytes .Supplementary file Size Download File type/resource GSM99459.CEL.gz
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