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Status
Public on Mar 08, 2006
Title
brain, Right Parietal Occipital: Extract75_le2
Sample type
RNA
Source name
brain, Right Parietal Occipital
Organism
Homo sapiens Characteristics
tissue: brain, Right Parietal Occipital
Extracted molecule
total RNA
Extraction protocol
RNA extraction was performed as described previously (Mischel PS, Shai R, Shi T, et al Identification of molecular subtypes of glioblastoma by gene expression profiling. Oncogene, 2003;22:2361-73) and analyzed on both a spectrophotometer and Agilent 2100 Bioanalyzer (Agilent Technologies, Palo Alto, CA).
Label protocol
Probes were prepared using standard Affymetrix protocols and hybridized to Affymetrix HG-U133A and HG-U133B arrays (Affymetrix, Santa Clara, CA).
Hybridization protocol
Standard Affymetrix protocols were used.
Scan protocol
Standard Affymetrix protocols were used.
Description
GBM
Submission date
Mar 08, 2006
Last update date
Sep 11, 2014
Contact name
Winnie Liang
E-mail(s)
[email protected] Organization name
Translational Genomics
Street address
445 N. Fifth Street
City
Phoenix
State/province
AZ
ZIP/Postal code
85012
Country
USA
Platform ID
GPL97 Series (1)
Relations Reanalyzed by
GSE61335
Data table header descriptions ID_REF The name of the probe set, blank for control probes
VALUE The signal value calculated by MAS 5 or GCOS software.
ABS_CALL The detection value calculated by the MAS 5 or GCOS software
DETECTION P-VALUE The detection p-value calculated by the MAS 5 or GCOS software
Data table ID_REF VALUE ABS_CALL DETECTION P-VALUE AFFX-BioB-5_at
2579.5642
P
0.001796
AFFX-BioB-M_at
6725.8394
P
0.000225
AFFX-BioB-3_at
3368.649
P
0.012547
AFFX-BioC-5_at
8868.781
P
0.000095
AFFX-BioC-3_at
6913.114
P
0.000127
AFFX-BioDn-5_at
5744.5254
P
0.000127
AFFX-BioDn-3_at
48490.31
P
0.000127
AFFX-CreX-5_at
72402.85
P
0.000044
AFFX-CreX-3_at
120450.555
P
0.000044
AFFX-DapX-5_at
214.6527
A
0.216524
AFFX-DapX-M_at
395.94495
A
0.485110
AFFX-DapX-3_at
34.661457
A
0.995516
AFFX-LysX-5_at
49.995
A
0.313723
AFFX-LysX-M_at
412.20096
A
0.699394
AFFX-LysX-3_at
164.21295
A
0.500000
AFFX-PheX-5_at
47.72646
A
0.957038
AFFX-PheX-M_at
38.733414
A
0.957038
AFFX-PheX-3_at
211.14174
A
0.588620
AFFX-ThrX-5_at
94.41605
A
0.794268
AFFX-ThrX-M_at
207.84567
A
0.686277
22645 686 Kbytes .Supplementary file Size Download File type/resource GSM99467.CEL.gz
3.3 Mb
(ftp) (http) CEL
