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Status
Public on Mar 08, 2006
Title
brain, Right Temporal Lobe: Extract78_le1
Sample type
RNA
Source name
brain, Right Temporal Lobe
Organism
Homo sapiens Characteristics
tissue: brain, Right Temporal Lobe
Extracted molecule
total RNA
Extraction protocol
RNA extraction was performed as described previously (Mischel PS, Shai R, Shi T, et al Identification of molecular subtypes of glioblastoma by gene expression profiling. Oncogene, 2003;22:2361-73) and analyzed on both a spectrophotometer and Agilent 2100 Bioanalyzer (Agilent Technologies, Palo Alto, CA).
Label protocol
Probes were prepared using standard Affymetrix protocols and hybridized to Affymetrix HG-U133A and HG-U133B arrays (Affymetrix, Santa Clara, CA).
Hybridization protocol
Standard Affymetrix protocols were used.
Scan protocol
Standard Affymetrix protocols were used.
Description
GBM
Submission date
Mar 08, 2006
Last update date
Sep 11, 2014
Contact name
Winnie Liang
E-mail(s)
[email protected] Organization name
Translational Genomics
Street address
445 N. Fifth Street
City
Phoenix
State/province
AZ
ZIP/Postal code
85012
Country
USA
Platform ID
GPL96 Series (1)
Relations Reanalyzed by
GSM326670 Reanalyzed by
GSE61335
Data table header descriptions ID_REF The name of the probe set, blank for control probes
VALUE The signal value calculated by MAS 5 or GCOS software.
ABS_CALL The detection value calculated by the MAS 5 or GCOS software
DETECTION P-VALUE The detection p-value calculated by the MAS 5 or GCOS software
Data table ID_REF VALUE ABS_CALL DETECTION P-VALUE AFFX-BioB-5_at
1790.0541
P
0.006187
AFFX-BioB-M_at
3390.189
P
0.000225
AFFX-BioB-3_at
1817.133
P
0.001102
AFFX-BioC-5_at
5162.966
P
0.000195
AFFX-BioC-3_at
4266.11
P
0.000110
AFFX-BioDn-5_at
4337.8965
P
0.000060
AFFX-BioDn-3_at
34085.293
P
0.000127
AFFX-CreX-5_at
50095.9
P
0.000044
AFFX-CreX-3_at
70253.375
P
0.000044
AFFX-DapX-5_at
178.18481
A
0.216524
AFFX-DapX-M_at
45.273224
A
0.574038
AFFX-DapX-3_at
47.74613
A
0.852061
AFFX-LysX-5_at
142.49097
A
0.500000
AFFX-LysX-M_at
206.25821
A
0.559354
AFFX-LysX-3_at
116.51832
A
0.396920
AFFX-PheX-5_at
22.204016
A
0.932322
AFFX-PheX-M_at
39.38503
A
0.794268
AFFX-PheX-3_at
215.3822
A
0.603080
AFFX-ThrX-5_at
36.455296
A
0.631562
AFFX-ThrX-M_at
53.990654
A
0.659339
22283 687 Kbytes .Supplementary file Size Download File type/resource GSM99472.CEL.gz
3.5 Mb
(ftp) (http) CEL
